Vikram Khipple Mulligan

According to our database, Vikram Khipple Mulligan authored at least 12 papers between 2016 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

MIMIC: A Generative Multimodal Foundation Model for Biomolecules.

Siavash Golkar, Jake Kovalic, Irina Espejo Morales, Samuel Sledzieski, Minhuan Li, Ksenia Sokolova, Géraud Krawezik, Alberto Bietti, Claudia Skok Gibbs, Roman Klypa, Shengwei Xiong, François Lanusse, Liam Holden Parker, Kyunghyun Cho, Miles D. Cranmer, Tom Hehir, Michael McCabe, Lucas Meyer, Rudy Morel, Payel Mukhopadhyay, Mariel Pettee, Helen Qu, Jeff Shen, David Fouhey, Hadi Sotoudeh, Vikram Khipple Mulligan, Pilar Cossio, Sonya M. Hanson, Alisha N. Jones, Olga G. Troyanskaya, Shirley Ho

CoRR, April, 2026

Playing Dice with the Universe: Programming Quantum Computers to Play Traditional Games.

Tristan Zaborniak, Vikram Khipple Mulligan

CoRR, April, 2026

Entangled happily ever after: Wedding reception seating mapped to classical and quantum optimizers.

Karie A. Nicholas, Vikram Khipple Mulligan

CoRR, April, 2026

Protein Design with Agent Rosetta: A Case Study for Specialized Scientific Agents.

Jacopo Teneggi, S. M. Bargeen A. Turzo, Tanya Marwah, Alberto Bietti, P. Douglas Renfrew, Vikram Khipple Mulligan, Siavash Golkar

CoRR, March, 2026

2024

Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins.

Moritz Ertelt, Vikram Khipple Mulligan, Jack B. Maguire, Sergey Lyskov, Rocco Moretti, Torben Schiffner, Jens Meiler, Clara T. Schoeder

PLoS Comput. Biol., 2024

2021

XENet: Using a new graph convolution to accelerate the timeline for protein design on quantum computers.

Jack B. Maguire, Daniele Grattarola, Vikram Khipple Mulligan, Eugene Klyshko, Hans Melo

PLoS Comput. Biol., 2021

MHCEpitopeEnergy, a Flexible Rosetta-Based Biotherapeutic Deimmunization Platform.

Brahm J. Yachnin, Vikram Khipple Mulligan, Sagar D. Khare, Chris Bailey-Kellogg

J. Chem. Inf. Model., 2021

2020

Better together: Elements of successful scientific software development in a distributed collaborative community.

Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau

PLoS Comput. Biol., 2020

2019

De novo design of bioactive protein switches.

Robert A. Langan, Scott E. Boyken, Andrew H. Ng, Jennifer A. Samson, Galen Dods, Alexandra M. Westbrook, Taylor H. Nguyen, Marc J. Lajoie, Zibo Chen, Stephanie Berger, Vikram Khipple Mulligan, John E. Dueber, Walter R. P. Novak, Hana El-Samad, David Baker

Nat., 2019

Programmable design of orthogonal protein heterodimers.

Zibo Chen, Scott E. Boyken, Mengxuan Jia, Florian Busch, David Flores-Solis, Matthew J. Bick, Peilong Lu, Zachary L. VanAernum, Aniruddha Sahasrabuddhe, Robert A. Langan, Sherry Bermeo, T. J. Brunette, Vikram Khipple Mulligan, Lauren P. Carter, Frank DiMaio, Nikolaos G. Sgourakis, Vicki H. Wysocki, David Baker

Nat., 2019

A systematic study of minima in alanine dipeptide.

Vladimir A. Mironov, Yuri Alexeev, Vikram Khipple Mulligan, Dmitri G. Fedorov

J. Comput. Chem., 2019

2016

Accurate <i>de novo</i> design of hyperstable constrained peptides.

Gaurav Bhardwaj, Vikram Khipple Mulligan, Christopher D. Bahl, Jason M. Gilmore, Peta J. Harvey, Olivier Cheneval, Garry W. Buchko, Surya V. S. R. K. Pulavarti, Quentin Kaas, Alexander Eletsky, Po-Ssu Huang, William A. Johnsen, Per Greisen, Gabriel J. Rocklin, Yifan Song, Thomas W. Linsky, Andrew M. Watkins, Stephen A. Rettie, Xianzhong Xu, Lauren P. Carter, Richard Bonneau, James M. Olson, Evangelos A. Coutsias, Colin E. Correnti, Thomas Szyperski, David J. Craik, David Baker

Nat., 2016