Ion I. Mandoiu

According to our database1, Ion I. Mandoiu authored at least 124 papers between 1998 and 2020.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2020
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples.
Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

2019
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr., 2019

Locality Sensitive Imputation for Single Cell RNA-Seq Data.
J. Comput. Biol., 2019

SMART2: Multi-library Statistical Mitogenome Assembly with Repeats.
Proceedings of the Computational Advances in Bio and Medical Sciences, 2019

Workshop on Computational Advances in Molecular Epidemiology.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
SC1: A web-based single cell RNA-seq analysis pipeline.
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

Statistical Mitogenome Assembly with Repeats.
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

QoS Multimedia Multicast Routing.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics, 2018

Practical Approximations of Steiner Trees in Uniform Orientation Metrics.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics, 2018

2017
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
BMC Bioinform., 2017

Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.
Bioinform., 2017

Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
Pairing T Cell Receptor α and β sequences using pooling and min-cost flows.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

2015
Metabolic Pathway Predictions for Metabolomics: A Molecular Structure Matching Approach.
J. Chem. Inf. Model., 2015

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform., 2015

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

2014
ILP-based maximum likelihood genome scaffolding.
BMC Bioinform., 2014

Feature selection and classifier performance on diverse bio- logical datasets.
BMC Bioinform., 2014

SILP3: Maximum likelihood approach to scaffolding.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

Deterministic regression algorithm for transcriptome frequency estimation.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013
Guest Editors' introduction to the special section on bioinformatics research and applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics.
J. Chem. Inf. Model., 2013

BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical Structures in Chemical Structure Space.
J. Chem. Inf. Model., 2013

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform., 2013

Optimizing pooling strategies for the massive next-generation sequencing of viral samples.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

Estimation of viral population structure from amplicon-based reads.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

Towards whole transcriptome deconvolution using single-cell data.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

Reference assisted nucleic acid sequence reconstruction from mass spectrometry data.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012
Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
Silico Biol., 2012

Reconstructing viral quasispecies from NGS amplicon reads.
Silico Biol., 2012

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads.
BMC Bioinform., 2012

Guest Editors' Introduction.
BMC Bioinform., 2012

Workshop: Inference of allele specific expression levels from RNA-Seq data.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Workshop: A maximum likelihood method for quasispecies spectrum assembly.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Scalable genome scaffolding using integer linear programming.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Optimal Testing of Digital Microfluidic Biochips.
INFORMS J. Comput., 2011

Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.
BMC Bioinform., 2011

Inferring viral quasispecies spectra from 454 pyrosequencing reads.
BMC Bioinform., 2011

Estimation of alternative splicing isoform frequencies from RNA-Seq data.
Algorithms Mol. Biol., 2011

Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data.
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

Accurate Estimation of Gene Expression Levels from DGE Sequencing Data.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

Workshop: The utility of next generation sequencing for genome scale studies.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: Empirical comparison of protocols for sequencing-based gene and isoform expression profiling.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: Scaffolding draft genomes using paired sequencing data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Poster: ViSpA: Viral spectrum assembling method.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution.
J. Comput. Biol., 2009

GEDI: Scalable Algorithms for Genotype Error Detection and Imputation
CoRR, 2009

Imputation-Based Local Ancestry Inference in Admixed Populations.
Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads.
Proceedings of the Bioinformatics and Computational Biology, 2009

2008
Highly Scalable Genotype Phasing by Entropy Minimization.
IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.
J. Comput. Biol., 2008

Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution.
Proceedings of the Comparative Genomics, International Workshop, 2008

Faster greedy algorithms for Multiple Degenerate Primer Selection.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
QoS Multimedia Multicast Routing.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007

Practical Approximations of Steiner Trees in Uniform Orientation Metrics.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007

Multicommodity Flow Algorithms for Buffered Global Routing.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Enhanced Design Flow and Optimizations for Multiproject Wafers.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2007

Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks.
J. Univers. Comput. Sci., 2007

Efficient Algorithms for degenerate Primer Search.
Int. J. Found. Comput. Sci., 2007

2006
Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks.
Wirel. Networks, 2006

Computer-Aided Optimization of DNA Array Design and Manufacturing.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2006

Exact and Approximation Algorithms for DNA Tag Set Design.
J. Comput. Biol., 2006

High-Throughput SNP Genotyping by SBE/SBH.
Proceedings of the Computational Science, 2006

Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping.
Proceedings of the Computational Science, 2006

2005
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays.
Trans. Comp. Sys. Biology, 2005

Layout-aware scan chain synthesis for improved path delay fault coverage.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2005

The Y architecture for on-chip interconnect: analysis and methodology.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2005

Highly scalable algorithms for robust string barcoding.
Int. J. Bioinform. Res. Appl., 2005

Multicommodity Flow Algorithms for Buffered Global Routing
CoRR, 2005

DNA-BAR: distinguisher selection for DNA barcoding.
Bioinform., 2005

Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem.
Algorithmica, 2005

Improved algorithms for multiplex PCR primer set selection with amplification length constraints.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
Nontree routing for reliability and yield improvement [IC layout].
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2004

Selecting Forwarding Neighbors in Wireless Ad Hoc Networks.
Mob. Networks Appl., 2004

Scalable Heuristics for Design of DNA Probe Arrays.
J. Comput. Biol., 2004

Approximation Algorithms for Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints
CoRR, 2004

Multi-project reticle floorplanning and wafer dicing.
Proceedings of the 2004 International Symposium on Physical Design, 2004

2003
Minimum buffered routing with bounded capacitive load for slew rate and reliability control.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2003

On the skew-bounded minimum-buffer routing tree problem.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2003

Power efficient range assignment in ad-hoc wireless networks.
Proceedings of the 2003 IEEE Wireless Communications and Networking, 2003

Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem.
Proceedings of the Algorithms and Data Structures, 8th International Workshop, 2003

Estimation of wirelength reduction for lambda-geometry vs. manhattan placement and routing.
Proceedings of the 5th International Workshop on System-Level Interconnect Prediction (SLIP 2003), 2003

Engineering a scalable placement heuristic for DNA probe arrays.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Design Flow Enhancements for DNA Arrays.
Proceedings of the 21st International Conference on Computer Design (ICCD 2003), 2003

Evaluation of Placement Techniques for DNA Probe Array Layout.
Proceedings of the 2003 International Conference on Computer-Aided Design, 2003

Primal-dual algorithms for QoS multimedia multicast.
Proceedings of the Global Telecommunications Conference, 2003

Highly scalable algorithms for rectilinear and octilinear Steiner trees.
Proceedings of the 2003 Asia and South Pacific Design Automation Conference, 2003

2002
Provably good global buffering by generalized multiterminalmulticommodity flow approximation.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2002

A primal-dual schema based approximation algorithm for the element connectivity problem.
J. Algorithms, 2002

Border Length Minimization in DNA Array Design.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing.
Proceedings of the ASPDAC 2002 / VLSI Design 2002, 2002

Symmetric Connectivity with Minimum Power Consumption in Radio Networks.
Proceedings of the Foundations of Information Technology in the Era of Networking and Mobile Computing, 2002

Auctions with Buyer Preferences.
Proceedings of the Information Systems: The e-Business Challenge, 2002

Non-tree routing for reliability and yield improvement.
Proceedings of the 2002 IEEE/ACM International Conference on Computer-aided Design, 2002

2001
Practical Approximation Algorithms for Zero- and Bounded-Skew Trees.
SIAM J. Discret. Math., 2001

Practical Approximation Algorithms for Separable Packing Linear Programs.
Proceedings of the Algorithms and Data Structures, 7th International Workshop, 2001

Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability Control.
Proceedings of the 2001 IEEE/ACM International Conference on Computer-Aided Design, 2001

Provably good global buffering by multi-terminal multicommodity flow approximation.
Proceedings of ASP-DAC 2001, 2001

2000
A new heuristic for rectilinear Steiner trees.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2000

A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points.
Inf. Process. Lett., 2000

Provably Good Global Buffering Using an Available Buffer Block Plan.
Proceedings of the 2000 IEEE/ACM International Conference on Computer-Aided Design, 2000

1998
The 'Art of Trellis Decoding' Is Computationally Hardi - For Large Fields.
IEEE Trans. Inf. Theory, 1998

Optimum Extensions of Prefix Codes.
Inf. Process. Lett., 1998


  Loading...