Shane A. McCarthy

According to our database, Shane A. McCarthy authored at least 7 papers between 2017 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.

Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy

BMC Bioinform., December, 2023

YaHS: yet another Hi-C scaffolding tool.

Chenxi Zhou, Shane A. McCarthy, Richard Durbin

Bioinform., January, 2023

2021

Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors.

Dengfeng Guan, Shane A. McCarthy, Zemin Ning, Guohua Wang, Yadong Wang, Richard Durbin

BMC Bioinform., December, 2021

Efficient iterative Hi-C scaffolder based on N-best neighbors.

Dengfeng Guan, Shane A. McCarthy, Zemin Ning, Guohua Wang, Yadong Wang, Richard Durbin

BMC Bioinform., 2021

2020

Identifying and removing haplotypic duplication in primary genome assemblies.

Dengfeng Guan, Shane A. McCarthy, Jonathan Wood, Kerstin Howe, Yadong Wang, Richard Durbin

Bioinform., 2020

2019

Crumble: reference free lossy compression of sequence quality values.

James K. Bonfield, Shane A. McCarthy, Richard Durbin

Bioinform., 2019

2017

BCFtools/csq: haplotype-aware variant consequences.

Petr Danecek, Shane A. McCarthy

Bioinform., 2017