Eugene W. Myers

According to our database, Eugene W. Myers authored at least 122 papers between 1978 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.

Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy

BMC Bioinform., December, 2023

Local Interpretable Model-Agnostic Explanations for Multitarget Image Regression.

Kira Vinogradova, Gene Myers

Proceedings of the Joint Proceedings of the xAI-2023 Late-breaking Work, 2023

Merging Sorted Lists of Similar Strings.

Gene Myers

Proceedings of the 34th Annual Symposium on Combinatorial Pattern Matching, 2023

2022

Accurate k-mer Classification Using Read Profiles.

Yoshihiko Suzuki, Gene Myers

Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022

Estimation of Optical Aberrations in 3D Microscopic Bioimages.

Kira Vinogradova, Eugene W. Myers

Proceedings of the 7th International Conference on Frontiers of Signal Processing, 2022

2021

Finding long tandem repeats in long noisy reads.

Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers

Bioinform., 2021

2020

Fast and accurate aberration estimation from 3D bead images using convolutional neural networks.

Debayan Saha, Uwe Schmidt, Qinrong Zhang, Aurelien Barbotin, Qi Hu, Na Ji, Martin J. Booth, Martin Weigert, Eugene W. Myers

CoRR, 2020

Towards Interpretable Semantic Segmentation via Gradient-weighted Class Activation Mapping.

Kira Vinogradova, Alexandr Dibrov, Gene Myers

CoRR, 2020

Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy.

Martin Weigert, Uwe Schmidt, Robert Haase, Ko Sugawara, Gene Myers

Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2020

Removing Structured Noise with Self-Supervised Blind-Spot Networks.

Coleman Broaddus, Alexander Krull, Martin Weigert, Uwe Schmidt, Gene Myers

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Towards Interpretable Semantic Segmentation via Gradient-Weighted Class Activation Mapping (Student Abstract).

Kira Vinogradova, Alexandr Dibrov, Gene Myers

Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2018

Biobeam - Multiplexed wave-optical simulations of light-sheet microscopy.

Martin Weigert, Kaushikaram Subramanian, Sebastian T. Bundschuh, Eugene W. Myers, Moritz Kreysing

PLoS Comput. Biol., 2018

The genome of <i>Schmidtea mediterranea</i> and the evolution of core cellular mechanisms.

Markus A. Grohme, Siegfried Schloissnig, Andrei Rozanski, Martin Pippel, George R. Young, Sylke Winkler, Holger Brandl, Ian Henry, Andreas Dahl, Sean Powell, Michael Hiller, Eugene W. Myers, Jochen C. Rink

Nat., 2018

Cell Detection with Star-Convex Polygons.

Uwe Schmidt, Martin Weigert, Coleman Broaddus, Gene Myers

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2017

PreMosa: extracting 2D surfaces from 3D microscopy mosaics.

Corinna Blasse, Stephan Saalfeld, Raphaël Etournay, Andreas Sagner, Suzanne Eaton, Eugene W. Myers

Bioinform., 2017

Isotropic Reconstruction of 3D Fluorescence Microscopy Images Using Convolutional Neural Networks.

Martin Weigert, Loïc Royer, Florian Jug, Gene Myers

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Crowd sourcing image segmentation with iaSTAPLE.

Dmitrij Schlesinger, Florian Jug, Gene Myers, Carsten Rother, Dagmar Kainmueller

Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Efficient Algorithms for Moral Lineage Tracing.

Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres

Proceedings of the IEEE International Conference on Computer Vision, 2017

2016

A history of DNA sequence assembly.

Eugene W. Myers

it Inf. Technol., 2016

Next Generation Sequencing (Dagstuhl Seminar 16351).

Gene Myers, Mihai Pop, Knut Reinert, Tandy J. Warnow

Dagstuhl Reports, 2016

Seamless HPC Integration of Data-Intensive KNIME Workflows via UNICORE.

Richard Grunzke, Florian Jug, Bernd Schuller, René Jäkel, Gene Myers, Wolfgang E. Nagel

Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016

Moral Lineage Tracing.

Florian Jug, Evgeny Levinkov, Corinna Blasse, Eugene W. Myers, Bjoern Andres

Proceedings of the 2016 IEEE Conference on Computer Vision and Pattern Recognition, 2016

Mapping Auto-context Decision Forests to Deep ConvNets for Semantic Segmentation.

David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother

Proceedings of the British Machine Vision Conference 2016, 2016

2015

BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.

Yinan Wan, Fuhui Long, Lei Qu, Hang Xiao, Michael Hawrylycz, Eugene W. Myers, Hanchuan Peng

Neuroinformatics, 2015

Relating Cascaded Random Forests to Deep Convolutional Neural Networks for Semantic Segmentation.

David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother

CoRR, 2015

Uncertainty-Driven Forest Predictors for Vertebra Localization and Segmentation.

David L. Richmond, Dagmar Kainmueller, Ben Glocker, Carsten Rother, Gene Myers

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

2014

Efficient Local Alignment Discovery amongst Noisy Long Reads.

Gene Myers

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

Active Graph Matching for Automatic Joint Segmentation and Annotation of C. elegans.

Dagmar Kainmueller, Florian Jug, Carsten Rother, Gene Myers

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine.

Florian Jug, Tobias Pietzsch, Dagmar Kainmüller, Jan Funke, Matthias Kaiser, Erik van Nimwegen, Carsten Rother, Gene Myers

Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2013

Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging.

Saket Navlakha, Parvez Ahammad, Eugene W. Myers

BMC Bioinform., 2013

Fast and robust optical flow for time-lapse microscopy using super-voxels.

Fernando Amat, Eugene W. Myers, Philipp J. Keller

Bioinform., 2013

Discrete Methods for Image Analysis Applied to Molecular Biology.

Gene Myers

Proceedings of the Combinatorial Pattern Matching, 24th Annual Symposium, 2013

What's Behind Blast.

Gene Myers

Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012

Automated Tracking of Whiskers in Videos of Head Fixed Rodents.

Nathan G. Clack, Daniel H. O'Connor, Daniel Huber, Leopoldo T. Petreanu, Andrew Hires, Simon Peron, Karel Svoboda, Eugene W. Myers

PLoS Comput. Biol., 2012

2011

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models.

Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers

Neuroinformatics, 2011

Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions.

Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers

Neuroinformatics, 2011

Anisotropic path searching for automatic neuron reconstruction.

Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng

Medical Image Anal., 2011

Simultaneous recognition and segmentation of cells: application in <i>C.elegans</i>.

Lei Qu, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers, Hanchuan Peng

Bioinform., 2011

Automatic 3D neuron tracing using all-path pruning.

Hanchuan Peng, Fuhui Long, Gene Myers

Bioinform., 2011

3D Neuron Tip Detection in Volumetric Microscopy Images.

Min Liu, Hanchuan Peng, Amit K. Roy-Chowdhury, Eugene W. Myers

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

Error Tolerant Indexing and Alignment of Short Reads with Covering Template Families.

Eldar Giladi, John Healy, Gene Myers, Chris Hart, Philipp Kapranov, Doron Lipson, Steve Roels, Edward C. Thayer, Stan Letovsky

J. Comput. Biol., 2010

APBC 2010. The Eighth Asia Pacific Bioinformatics Conference Bangalore, India, 18-21 January 2010.

Laxmi Parida, Gene Myers

BMC Bioinform., 2010

Automated tracking and analysis of centrosomes in early <i>Caenorhabditis elegans</i> embryos.

Steffen Jaensch, Markus Decker, Anthony A. Hyman, Eugene W. Myers

Bioinform., 2010

Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching.

Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

2009

ISMB/ECCB 2009 Stockholm.

Marie-France Sagot, B. J. Morrison McKay, Gene Myers

Bioinform., 2009

VANO: a volume-object image annotation system.

Hanchuan Peng, Fuhui Long, Eugene W. Myers

Bioinform., 2009

2008

Straightening <i>Caenorhabditis elegans</i> images.

Hanchuan Peng, Fuhui Long, Xiao Liu, Stuart K. Kim, Eugene W. Myers

Bioinform., 2008

Automatic Recognition of Cells (ARC) for 3D Images of C. elegans.

Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers

Proceedings of the Research in Computational Molecular Biology, 2008

2007

Two algorithms for LCS Consecutive Suffix Alignment.

Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson

J. Comput. Syst. Sci., 2007

Computability of Models for Sequence Assembly.

Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno

Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

Straightening Worm Images.

Hanchuan Peng, Fuhui Long, Eugene W. Myers

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Automatic Segmentation of Nuclei in 3d Microscopy Images of C.Elegans.

Fuhui Long, Hanchuan Peng, Eugene W. Myers

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

2006

Efficient <i>q</i>-Gram Filters for Finding All <i>epsilon</i>-Matches over a Given Length.

Kim R. Rasmussen, Jens Stoye, Eugene W. Myers

J. Comput. Biol., 2006

Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers.

Tien-ho Lin, Eugene W. Myers, Eric P. Xing

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Clustering gene expression patterns of fly embryos.

Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers

Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Imaging-Based Systems Biology.

Gene Myers

Proceedings of the High Performance Computing, 2006

Invited Talk: Imaging-Based Systems Biology.

Gene Myers

Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006

2005

Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length.

Kim R. Rasmussen, Jens Stoye, Eugene W. Myers

Proceedings of the Research in Computational Molecular Biology, 2005

A motif-based framework for recognizing sequence families.

Roded Sharan, Eugene W. Myers

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

PILER: identification and classification of genomic repeats.

Robert C. Edgar, Eugene W. Myers

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

The fragment assembly string graph.

Eugene W. Myers

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004

Comparing <i>in situ m</i>RNA expression patterns of <i>drosophila</i> embryos.

Hanchuan Peng, Eugene W. Myers

Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Whole Genome Sequencing, Comparative Genomics, and Systems Biology.

Eugene W. Myers

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003

A Table-Driven, Full-Sensitivity Similarity Search Algorithm.

Gene Myers, Richard Durbin

J. Comput. Biol., 2003

ISMB 2003 - Editorial.

Gene Myers

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Advances in DNA Sequencing.

Gene Myers

Proceedings of the PCK50, 2003

2002

The greedy path-merging algorithm for contig scaffolding.

Daniel H. Huson, Knut Reinert, Eugene W. Myers

J. ACM, 2002

Invited Lecture - Accelerating Smith-Waterman Searches.

Gene Myers, Richard Durbin

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

The Assembly of the Human and Mouse Genomes.

Gene Myers

Proceedings of the Computing and Combinatorics, 8th Annual International Conference, 2002

2001

Comparing Assemblies Using Fragments and Mate-Pairs.

Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

Comparing sequence scaffolds.

Gene Myers

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

The greedy path-merging algorithm for sequence assembly.

Daniel H. Huson, Knut Reinert, Eugene W. Myers

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Design of a compartmentalized shotgun assembler for the human genome.

Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

The whole genome assembly of Drosophila.

Gene Myers

Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

1999

A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming.

Gene Myers

J. ACM, 1999

Whole-genome DNA sequencing.

Gene Myers

Comput. Sci. Eng., 1999

Progress toward the whole-genome shotgun sequencing of Drosophila.

Gene Myers

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Algorithms for whole genome shotgun sequencing.

Eric L. Anson, Eugene W. Myers

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

A Dataset Generator for Whole Genome Shotgun Sequencing.

Gene Myers

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

A Whole Genome Assembler for Drosophila.

Gene Myers

Proceedings of the German Conference on Bioinformatics, 1999

1998

Incremental String Comparison.

Gad M. Landau, Eugene W. Myers, Jeanette P. Schmidt

SIAM J. Comput., 1998

Identifying Satellites and Periodic Repetitions in Biological Sequences.

Marie-France Sagot, Eugene W. Myers

J. Comput. Biol., 1998

Xlandscape: the graphical display of word frequencies in sequences.

Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo

Bioinform., 1998

Identifying satellites in nucleic acid sequences.

Marie-France Sagot, Eugene W. Myers

Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

Reporting Exact and Approximate Regular Expression Matches.

Eugene W. Myers, Paulo Oliva, Katia S. Guimarães

Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998

1997

Algorithms for Computing and Integrating Physical Maps Using Unique Probes.

Mudita Jain, Eugene W. Myers

J. Comput. Biol., 1997

ReAligner: A Program for Refining DNA Sequence Multi-Alignments.

Eric L. Anson, Eugene W. Myers

J. Comput. Biol., 1997

Estimating the Probability of Approximate Matches.

Stefan Kurtz, Gene Myers

Proceedings of the Combinatorial Pattern Matching, 8th Annual Symposium, 1997

1996

An Algorithm for Locating Nonoverlapping Regions of Maximum Alignment Score.

Sampath Kannan, Eugene W. Myers

SIAM J. Comput., 1996

Progressive Multiple Alignment with Constraints.

Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller

J. Comput. Biol., 1996

A Subquadratic Algorithm for Approximate Limited Expression Matching.

Sun Wu, Udi Manber, Eugene W. Myers

Algorithmica, 1996

1995

Toward Simplifying and Accurately Formulating Fragment Assembly.

Eugene W. Myers

J. Comput. Biol., 1995

A Note on Scoring Clones Given a Probe Ordering.

Mudita Jain, Eugene W. Myers

J. Comput. Biol., 1995

A Subquadratic Algorithm for Approximate Regular Expression Matching.

Sun Wu, Udi Manber, Eugene W. Myers

J. Algorithms, 1995

Approximately Matching Context-Free Languages.

Gene Myers

Inf. Process. Lett., 1995

Guest Editor's Foreword: Special Issue on Computational Molecular Biology.

Eugene W. Myers

Algorithmica, 1995

Approximate Regular Expression Pattern Matching with Concave Gap Penalties.

James R. Knight, Eugene W. Myers

Algorithmica, 1995

Super-Pattern Matching.

James R. Knight, Eugene W. Myers

Algorithmica, 1995

Combinatiorial Algorithms for DNA Sequence Assembly.

John D. Kececioglu, Eugene W. Myers

Algorithmica, 1995

Chaining Multiple-Alignment Fragments in Sub-Quadratic Time.

Gene Myers, Webb Miller

Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995

1994

A Sublinear Algorithm for Approximate Keyword Searching.

Eugene W. Myers

Algorithmica, 1994

1993

Suffix Arrays: A New Method for On-Line String Searches.

Udi Manber, Eugene W. Myers

SIAM J. Comput., 1993

An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score.

Sampath Kannan, Eugene W. Myers

Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993

1992

A Four Russians Algorithm for Regular Expression Pattern Matching.

Eugene W. Myers

J. ACM, 1992

Approximate Matching of Network Expressions with Spacers.

Gene Myers

Proceedings of the LATIN '92, 1992

1990

An O(NP) Sequence Comparison Algorithm.

Sun Wu, Udi Manber, Gene Myers, Webb Miller

Inf. Process. Lett., 1990

1989

Row Replacement Algorithms for Screen Editors.

Eugene W. Myers, Webb Miller

ACM Trans. Program. Lang. Syst., 1989

1988

A Simple Row-replacement Method.

Webb Miller, Eugene W. Myers

Softw. Pract. Exp., 1988

Optimal alignments in linear space.

Eugene W. Myers, Webb Miller

Comput. Appl. Biosci., 1988

A software tool for finding locally optimal alignments in protein and nucleic acid sequences.

J. D. Hall, Eugene W. Myers

Comput. Appl. Biosci., 1988

1987

An Editor for Revision Control.

Christopher W. Fraser, Eugene W. Myers

ACM Trans. Program. Lang. Syst., 1987

1986

Side-effects in Automatic File Updating.

Webb Miller, Eugene W. Myers

Softw. Pract. Exp., 1986

Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences.

Eugene W. Myers, David W. Mount

Nucleic Acids Res., 1986

An O(ND) Difference Algorithm and Its Variations.

Eugene W. Myers

Algorithmica, 1986

1985

A File Comparison Program.

Webb Miller, Eugene W. Myers

Softw. Pract. Exp., 1985

An O(E log E + I) Expected Time Algorithm for the Planar Segment Intersection Problem.

Eugene W. Myers

SIAM J. Comput., 1985

1984

Analyzing and compressing assembly code.

Christopher W. Fraser, Eugene W. Myers, Alan L. Wendt

Proceedings of the 1984 SIGPLAN Symposium on Compiler Construction, 1984

Efficient Applicative Data Types.

Eugene W. Myers

Proceedings of the Conference Record of the Eleventh Annual ACM Symposium on Principles of Programming Languages, 1984

1983

An Applicative Random-Access Stack.

Eugene W. Myers

Inf. Process. Lett., 1983

1981

A Precise Interprocedural Data Flow Algorithm.

Eugene W. Myers

Proceedings of the Conference Record of the Eighth Annual ACM Symposium on Principles of Programming Languages, 1981

BIGMAC II: A FORTRAN Language Augmentation Tool.

Eugene W. Myers, Leon J. Osterweil

Proceedings of the 5th International Conference on Software Engineering, 1981

1978

Finding All Spanning Trees of Directed and Undirected Graphs.

Harold N. Gabow, Eugene W. Myers

SIAM J. Comput., 1978