James K. Bonfield

According to our database, James K. Bonfield authored at least 9 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

CRAM 3.1: advances in the CRAM file format.

James K. Bonfield

Bioinform., 2022

2019

Crumble: reference free lossy compression of sequence quality values.

James K. Bonfield, Shane A. McCarthy, Richard Durbin

Bioinform., 2019

2014

The Scramble conversion tool.

James K. Bonfield

Bioinform., 2014

2010

Improvements to services at the European Nucleotide Archive.

Rasko Leinonen, Ruth Akhtar, Ewan Birney, James K. Bonfield, Lawrence Bower, Matthew Corbett, Ying Cheng, Fehmi Demiralp, Nadeem Faruque, Neil Goodgame, Richard Gibson, Gemma Hoad, Christopher I. Hunter, Mikyung Jang, Steven Leonard, Quan Lin, Rodrigo Lopez, Michael Maguire, Hamish McWilliam, Sheila Plaister, Rajesh Radhakrishnan, Siamak Sobhany, Guy Slater, Petra ten Hoopen, Franck Valentin, Robert Vaughan, Vadim Zalunin, Daniel R. Zerbino, Guy Cochrane

Nucleic Acids Res., 2010

Gap5 - editing the billion fragment sequence assembly.

James K. Bonfield, Andrew Whitwham

Bioinform., 2010

2009

Petabyte-scale innovations at the European Nucleotide Archive.

Guy Cochrane, Ruth Akhtar, James K. Bonfield, Lawrence Bower, Fehmi Demiralp, Nadeem Faruque, Richard Gibson, Gemma Hoad, Tim J. P. Hubbard, Christopher I. Hunter, Mikyung Jang, Szilveszter Juhos, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Sheila Plaister, Rajesh Radhakrishnan, Stephen Robinson, Siamak Sobhany, Petra ten Hoopen, Robert Vaughan, Vadim Zalunin, Ewan Birney

Nucleic Acids Res., 2009

2008

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.

Guy Cochrane, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, James K. Bonfield, Lawrence Bower, Paul Browne, Matias Castro, Tony Cox, Fehmi Demiralp, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Mikyung Jang, Tamara Kulikova, Alberto Labarga, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Sheila Plaister, Stephen Robinson, Siamak Sobhany, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler, Tim J. P. Hubbard, Ewan Birney

Nucleic Acids Res., 2008

2002

ZTR: a new format for DNA sequence trace data.

James K. Bonfield, Rodger Staden

Bioinform., 2002

Trev: a DNA trace editor and viewer.

James K. Bonfield, Kathryn F. Beal, Matthew J. Betts, Rodger Staden

Bioinform., 2002