Sheng-You Huang
Orcid: 0000-0002-4209-4565
According to our database1,
Sheng-You Huang
authored at least 37 papers
between 2006 and 2023.
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Bibliography
2023
Protein-protein contact prediction by geometric triangle-aware protein language models.
Nat. Mac. Intell., October, 2023
HCovDock: an efficient docking method for modeling covalent protein-ligand interactions.
Briefings Bioinform., January, 2023
DeepHomo2.0: improved protein-protein contact prediction of homodimers by transformer-enhanced deep learning.
Briefings Bioinform., January, 2023
2022
Holo Protein Conformation Generation from Apo Structures by Ligand Binding Site Refinement.
J. Chem. Inf. Model., 2022
Inclusion of Desolvation Energy into Protein-Protein Docking through Atomic Contact Potentials.
J. Chem. Inf. Model., 2022
J. Cheminformatics, 2022
Bioinform., 2022
2021
NLDock: a Fast Nucleic Acid-Ligand Docking Algorithm for Modeling RNA/DNA-Ligand Complexes.
J. Chem. Inf. Model., 2021
Full-length de novo protein structure determination from cryo-EM maps using deep learning.
Bioinform., 2021
Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexes.
Briefings Bioinform., 2021
EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps.
Briefings Bioinform., 2021
2020
Improving Protein-Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM-GBSA Scoring Function.
J. Chem. Inf. Model., 2020
ITScore-NL: An Iterative Knowledge-Based Scoring Function for Nucleic Acid-Ligand Interactions.
J. Chem. Inf. Model., 2020
Topology-independent and global protein structure alignment through an FFT-based algorithm.
Bioinform., 2020
2019
HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.
Nucleic Acids Res., 2019
Integrating Bonded and Nonbonded Potentials in the Knowledge-Based Scoring Function for Protein Structure Prediction.
J. Chem. Inf. Model., 2019
BMC Bioinform., 2019
PepBDB: a comprehensive structural database of biological peptide-protein interactions.
Bioinform., 2019
Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.
Bioinform., 2019
2018
HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
Nucleic Acids Res., 2018
HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry.
Nucleic Acids Res., 2018
Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides.
J. Chem. Inf. Model., 2018
New Knowledge-Based Scoring Function with Inclusion of Backbone Conformational Entropies from Protein Structures.
J. Chem. Inf. Model., 2018
Bioinform., 2018
Comprehensive assessment of flexible-ligand docking algorithms: current effectiveness and challenges.
Briefings Bioinform., 2018
Proceedings of the Intelligent Computing Theories and Application, 2018
2017
HDOCK: a web server for protein-protein and protein-DNA/RNA docking based on a hybrid strategy.
Nucleic Acids Res., 2017
J. Cheminformatics, 2017
2016
HybridDock: A Hybrid Protein-Ligand Docking Protocol Integrating Protein- and Ligand-Based Approaches.
J. Chem. Inf. Model., 2016
2013
Automated Large-Scale File Preparation, Docking, and Scoring: Evaluation of ITScore and STScore Using the 2012 Community Structure-Activity Resource Benchmark.
J. Chem. Inf. Model., 2013
J. Comput. Chem., 2013
2011
Construction and Test of Ligand Decoy Sets Using MDock: Community Structure-Activity Resource Benchmarks for Binding Mode Prediction.
J. Chem. Inf. Model., 2011
Scoring and Lessons Learned with the CSAR Benchmark Using an Improved Iterative Knowledge-Based Scoring Function.
J. Chem. Inf. Model., 2011
2010
Inclusion of Solvation and Entropy in the Knowledge-Based Scoring Function for Protein-Ligand Interactions.
J. Chem. Inf. Model., 2010
2006
An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function.
J. Comput. Chem., 2006
An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials.
J. Comput. Chem., 2006