Shili Lin

According to our database, Shili Lin authored at least 27 papers between 1997 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data.

Qing Xie, Chenggong Han, Victor Jin, Shili Lin

PLoS Comput. Biol., 2022

2021

A Novel Pigeon-Inspired Optimized RBF Model for Parallel Battery Branch Forecasting.

Yanhui Zhang, Shili Lin, Haiping Ma, Yuanjun Guo, Wei Feng

Complex., 2021

Are dropout imputation methods for scRNA-seq effective for scHi-C data?

Chenggong Han, Qing Xie, Shili Lin

Briefings Bioinform., 2021

2019

Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures.

Jincheol Park, Shili Lin

Briefings Bioinform., 2019

2017

Investigation on dynamic equalisation performance of lithium battery pack management.

Jie Lv, Wenji Song, Shili Lin, Ziping Feng, Yulong Ding, Yongliang Li

IET Circuits Devices Syst., 2017

2016

Sparse Inverse Covariance Estimation with <i>L</i>₀ Penalty for Network Construction with Omics Data.

Zhenqiu Liu, Shili Lin, Nan Deng, Dermot P. B. McGovern, Steven T. Piantadosi

J. Comput. Biol., 2016

Impact of data resolution on three-dimensional structure inference methods.

Jincheol Park, Shili Lin

BMC Bioinform., 2016

Statistical methods for detecting differentially methylated regions based on MethylCap-seq data.

Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin

Briefings Bioinform., 2016

2015

GrammR: graphical representation and modeling of count data with application in metagenomics.

Deepak Nag Ayyala, Shili Lin

Bioinform., 2015

Network construction and structure detection with metagenomic count data.

Zhenqiu Liu, Shili Lin, Steven T. Piantadosi

BioData Min., 2015

Detecting associations of rare variants with common diseases: collapsing or haplotyping?

Meng Wang, Shili Lin

Briefings Bioinform., 2015

2014

A Mixture Modeling Framework for Differential Analysis of High-Throughput Data.

Cenny Taslim, Shili Lin

Comput. Math. Methods Medicine, 2014

FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads.

Meng Wang, Shili Lin

Bioinform., 2014

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.

David E. Frankhouser, Mark Murphy, James S. Blachly, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh

Bioinform., 2014

2011

Identifying hypermethylated CpG islands using a quantile regression model.

Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin

BMC Bioinform., 2011

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.

Cenny Taslim, Tim Hui-Ming Huang, Shili Lin

Bioinform., 2011

Preprocessing differential methylation hybridization microarray data.

Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin

BioData Min., 2011

Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model.

Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010

Sparse Support Vector Machines with L_{p} Penalty for Biomarker Identification.

Zhenqiu Liu, Shili Lin, Ming Tan

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009

A robust unified approach to analyzing methylation and gene expression data.

Abbas Khalili, Tim Hui-Ming Huang, Shili Lin

Comput. Stat. Data Anal., 2009

Identifying differentially methylated genes using mixed effect and generalized least square models.

Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin

BMC Bioinform., 2009

Comparative study on ChIP-seq data: normalization and binding pattern characterization.

Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang

Bioinform., 2009

2008

Probe signal correction for differential methylation hybridization experiments.

Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin

BMC Bioinform., 2008

2007

Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data.

Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin

BMC Bioinform., 2007

2006

Genome-Wide Tagging SNPs with Entropy-Based Monte Carlo Method.

Zhenqiu Liu, Shili Lin, Ming Tan

J. Comput. Biol., 2006

2004

Class discovery and classification of tumor samples using mixture modeling of gene expression data - a unified approach.

Roxana Alexandridis, Shili Lin, Mark Irwin

Bioinform., 2004

1997

An Algorithm for Haplotype Analysis.

Shili Lin, Terence P. Speed

J. Comput. Biol., 1997