Shumpei Ishikawa

According to our database, Shumpei Ishikawa authored at least 14 papers between 2006 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Comprehensive Pathological Image Segmentation via Teacher Aggregation for Tumor Microenvironment Analysis.

Daisuke Komura, Maki Takao, Mieko Ochi, Takumi Onoyama, Hiroto Katoh, Hiroyuki Abe, Hiroyuki Sano, Teppei Konishi, Toshio Kumasaka, Tomoyuki Yokose, Yohei Miyagi, Tetsuo Ushiku, Shumpei Ishikawa

CoRR, January, 2025

SpatialKNifeY (SKNY): Extending from spatial domain to surrounding area to identify microenvironment features with single-cell spatial omics data.

Shunsuke A. Sakai, Ryosuke Nomura, Satoi Nagasawa, Sunggi Chi, Ayako Suzuki, Yutaka Suzuki, Mitsuho Imai, Yoshiaki Nakamura, Takayuki Yoshino, Shumpei Ishikawa, Katsuya Tsuchihara, Shun-Ichiro Kageyama, Riu Yamashita

PLoS Comput. Biol., 2025

2024

Multimodal Whole Slide Foundation Model for Pathology.

Tong Ding, Sophia J. Wagner, Andrew H. Song, Richard J. Chen, Ming Y. Lu, Andrew Zhang, Anurag J. Vaidya, Guillaume Jaume, Muhammad Shaban, Ahrong Kim, Drew F. K. Williamson, Bowen Chen, Cristina Almagro-Pérez, Paul Doucet, Sharifa Sahai, Chengkuan Chen, Daisuke Komura, Akihiro Kawabe, Shumpei Ishikawa, Georg Gerber, Tingying Peng, Long Phi Le, Faisal Mahmood

CoRR, 2024

Pathology Foundation Models.

Mieko Ochi, Daisuke Komura, Shumpei Ishikawa

CoRR, 2024

SegRep: Mask-Supervised Learning for Segment Representation in Pathology Images.

Chichun Yang, Daisuke Komura, Mieko Ochi, Miwako Kakiuchi, Hiroto Katoh, Tetsuo Ushiku, Shumpei Ishikawa

IEEE Access, 2024

Enhanced Interpretability in Histopathological Images via Combined Tissue and Cell-Level Graph Analysis.

Mieko Ochi, Daisuke Komura, Tetsuo Ushiku, Yasushi Rino, Shumpei Ishikawa

Proceedings of the Applications of Medical Artificial Intelligence, 2024

2023

Meet the authors: Daisuke Komura and Shumpei Ishikawa.

Daisuke Komura, Shumpei Ishikawa

Patterns, July, 2023

Restaining-based annotation for cancer histology segmentation to overcome annotation-related limitations among pathologists.

Daisuke Komura, Takumi Onoyama, Koki Shinbo, Hiroto Odaka, Minako Hayakawa, Mieko Ochi, Ranny Rahaningrum Herdiantoputri, Haruya Endo, Hiroto Katoh, Tohru Ikeda, Tetsuo Ushiku, Shumpei Ishikawa

Patterns, February, 2023

2022

Viola: a structural variant signature extractor with user-defined classifications.

Itsuki Sugita, Shohei Matsuyama, Hiroki Dobashi, Daisuke Komura, Shumpei Ishikawa

Bioinform., 2022

2019

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning.

Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Shinichiro Atsumi, Hirotomo Koda, Asami Yamamoto, Yasuyuki Seto, Masashi Fukayama, Rui Yamaguchi, Seiya Imoto, Shumpei Ishikawa

BMC Bioinform., 2019

2018

A benchmark for comparing precision medicine methods in thyroid cancer diagnosis using tissue microarrays.

Ching-Wei Wang, Yu-Ching Lee, Evelyne Calista, Fan Zhou, Hongtu Zhu, Ryohei Suzuki, Daisuke Komura, Shumpei Ishikawa, Shih-Ping Cheng

Bioinform., 2018

2017

Machine learning methods for histopathological image analysis.

Daisuke Komura, Shumpei Ishikawa

CoRR, 2017

2006

Noise Reduction from Genotyping Microarrays Using Probe Level Information.

Daisuke Komura, Kunihiro Nishimura, Shumpei Ishikawa, Binaya Panda, Jing Huang, Hiroshi Nakamura, Sigeo Ihara, Michitaka Hirose, Keith W. Jones, Hiroyuki Aburatani

Silico Biol., 2006

CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.

Jing Huang, Wen Wei, Joyce Chen, Jane Zhang, Guoying Liu, Xiaojun Di, Rui Mei, Shumpei Ishikawa, Hiroyuki Aburatani, Keith W. Jones, Michael H. Shapero

BMC Bioinform., 2006