Riu Yamashita

According to our database, Riu Yamashita authored at least 12 papers between 2002 and 2015.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2015

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data.

Ayako Suzuki, Hiroyuki Wakaguri, Riu Yamashita, Shin Kawano, Katsuya Tsuchihara, Sumio Sugano, Yutaka Suzuki, Kenta Nakai

Nucleic Acids Res., 2015

2012

DBTSS: DataBase of Transcriptional Start Sites progress report in 2012.

Riu Yamashita, Sumio Sugano, Yutaka Suzuki, Kenta Nakai

Nucleic Acids Res., 2012

2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi

J. Biomed. Semant., 2011

2010

DBTSS provides a tissue specific dynamic view of Transcription Start Sites.

Riu Yamashita, Hiroyuki Wakaguri, Sumio Sugano, Yutaka Suzuki, Kenta Nakai

Nucleic Acids Res., 2010

2008

DBTSS: database of transcription start sites, progress report 2008.

Hiroyuki Wakaguri, Riu Yamashita, Yutaka Suzuki, Sumio Sugano, Kenta Nakai

Nucleic Acids Res., 2008

2007

Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.

Toshiyuki Okumura, Hiroki Makiguchi, Yuko Makita, Riu Yamashita, Kenta Nakai

Nucleic Acids Res., 2007

2006

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Katsuki Tsuritani, Kenta Nakai, Sumio Sugano

Nucleic Acids Res., 2006

DBTGR: a database of tunicate promoters and their regulatory elements.

Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, Kenta Nakai

Nucleic Acids Res., 2006

2005

Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues.

Kikuya Kato, Riu Yamashita, Ryo Matoba, Morito Monden, Shinzaburo Noguchi, Toshihisa Takagi, Kenta Nakai

Nucleic Acids Res., 2005

2004

BTSS, DataBase of Transcriptional Start Sites: progress report 2004.

Yutaka Suzuki, Riu Yamashita, Sumio Sugano, Kenta Nakai

Nucleic Acids Res., 2004

Large-scale collection and characterization of promoters of human and mouse genes.

Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano

Silico Biol., 2004

2002

DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs.

Yutaka Suzuki, Riu Yamashita, Kenta Nakai, Sumio Sugano

Nucleic Acids Res., 2002