Shun Sakuraba
Orcid: 0000-0001-5768-2389
According to our database1,
Shun Sakuraba
authored at least 12 papers
between 2009 and 2022.
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Bibliography
2022
PLoS Comput. Biol., 2022
2020
Large-Scale Parallel Implementation of Hartree-Fock Exchange Energy on Real-Space Grids Using 3D-Parallel Fast Fourier Transform.
J. Chem. Inf. Model., 2020
2019
Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA.
PLoS Comput. Biol., 2019
2018
PLoS Comput. Biol., 2018
Performance evaluation of the zero-multipole summation method in modern molecular dynamics software.
J. Comput. Chem., 2018
Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities.
BMC Bioinform., 2018
2016
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation.
PLoS Comput. Biol., 2016
2014
Molecular Binding Sites Are Located Near the Interface of Intrinsic Dynamics Domains (IDDs).
J. Chem. Inf. Model., 2014
Ermod: Fast and versatile computation software for solvation free energy with approximate theory of solutions.
J. Comput. Chem., 2014
Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules.
J. Comput. Chem., 2014
2009
Multiple Markov transition matrix method: Obtaining the stationary probability distribution from multiple simulations.
J. Comput. Chem., 2009