Shunxing Bao

Orcid: 0000-0001-6376-4292

According to our database1, Shunxing Bao authored at least 86 papers between 2016 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Online presence:

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Bibliography

2024
Nucleus subtype classification using inter-modality learning.
CoRR, 2024

Super-Resolution Multi-Contrast Unbiased Eye Atlases With Deep Probabilistic Refinement.
CoRR, 2024

2023
UNesT: Local spatial representation learning with hierarchical transformer for efficient medical segmentation.
Medical Image Anal., December, 2023

Semantic-Aware Contrastive Learning for Multi-Object Medical Image Segmentation.
IEEE J. Biomed. Health Informatics, September, 2023

DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution.
CoRR, 2023

Inter-vendor harmonization of Computed Tomography (CT) reconstruction kernels using unpaired image translation.
CoRR, 2023

Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization.
CoRR, 2023

Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration.
CoRR, 2023

Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers.
CoRR, 2023

Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures.
CoRR, 2023

Leverage Weakly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning.
CoRR, 2023

High-performance Data Management for Whole Slide Image Analysis in Digital Pathology.
CoRR, 2023

Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology.
CoRR, 2023

Feasibility of Universal Anomaly Detection without Knowing the Abnormality in Medical Images.
CoRR, 2023

All-in-SAM: from Weak Annotation to Pixel-wise Nuclei Segmentation with Prompt-based Finetuning.
CoRR, 2023

Multi-Contrast Computed Tomography Atlas of Healthy Pancreas.
CoRR, 2023

Exploring shared memory architectures for end-to-end gigapixel deep learning.
CoRR, 2023

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging.
CoRR, 2023

Cross-scale Multi-instance Learning for Pathological Image Diagnosis.
CoRR, 2023

DMSConfig: Automated Configuration Tuning for Distributed IoT Message Systems Using Deep Reinforcement Learning.
CoRR, 2023

Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection.
Comput. Biol. Medicine, 2023


Unsupervised registration refinement for generating unbiased eye atlas.
Proceedings of the Medical Imaging 2023: Image Processing, 2023

Longitudinal variability analysis on low-dose abdominal CT with deep learning-based segmentation.
Proceedings of the Medical Imaging 2023: Image Processing, 2023

Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis.
Proceedings of the Medical Imaging with Deep Learning, 2023

Scaling up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images.
Proceedings of the Medical Image Learning with Limited and Noisy Data, 2023

3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

2022
Workflow Integration of Research AI Tools into a Hospital Radiology Rapid Prototyping Environment.
J. Digit. Imaging, 2022

Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis.
J. Digit. Imaging, 2022

Single Slice Thigh CT Muscle Group Segmentation with Domain Adaptation and Self-Training.
CoRR, 2022

Adaptive Contrastive Learning with Dynamic Correlation for Multi-Phase Organ Segmentation.
CoRR, 2022

Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning.
CoRR, 2022

Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation.
CoRR, 2022

Characterizing Renal Structures with 3D Block Aggregate Transformers.
CoRR, 2022

Multi-contrast computed tomography healthy kidney atlas.
Comput. Biol. Medicine, 2022

Supervised deep generation of high-resolution arterial phase computed tomography kidney substructure atlas.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

Quantification of muscle, bones, and fat on single slice thigh CT.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

Accelerating 2D abdominal organ segmentation with active learning.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Cross-Scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images.
Proceedings of the Multiscale Multimodal Medical Imaging - Third International Workshop, 2022

MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging.
Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022

Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data.
Proceedings of the Medical Imaging 2022: Computer-Aided Diagnosis, 2022

Guarding Against Universal Adversarial Perturbations in Data-driven Cloud/Edge Services.
Proceedings of the IEEE International Conference on Cloud Engineering, 2022

FedACA: An Adaptive Communication-Efficient Asynchronous Framework for Federated Learning.
Proceedings of the IEEE International Conference on Autonomic Computing and Self-Organizing Systems, 2022

2021
Body Part Regression With Self-Supervision.
IEEE Trans. Medical Imaging, 2021

High-resolution 3D abdominal segmentation with random patch network fusion.
Medical Image Anal., 2021

Attention-Guided Supervised Contrastive Learning for Semantic Segmentation.
CoRR, 2021

Development and characterization of a chest CT atlas.
Proceedings of the Medical Imaging 2021: Image Processing, Online, February 15-19, 2021, 2021

Renal cortex, medulla and pelvicaliceal system segmentation on arterial phase CT images with random patch-based networks.
Proceedings of the Medical Imaging 2021: Image Processing, Online, February 15-19, 2021, 2021

Construction of a multi-phase contrast computed tomography kidney atlas.
Proceedings of the Medical Imaging 2021: Image Processing, Online, February 15-19, 2021, 2021

Compound Figure Separation of Biomedical Images with Side Loss.
Proceedings of the Deep Generative Models, and Data Augmentation, Labelling, and Imperfections, 2021

Pancreas CT Segmentation by Predictive Phenotyping.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

CaCL: Class-Aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns.
Proceedings of the Deep Generative Models, and Data Augmentation, Labelling, and Imperfections, 2021

Rap-Net: Coarse-To-Fine Multi-Organ Segmentation With Single Random Anatomical Prior.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Configuration Tuning for Distributed IoT Message Systems Using Deep Reinforcement Learning: Poster Abstract.
Proceedings of the IoTDI '21: International Conference on Internet-of-Things Design and Implementation, 2021

Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging.
Proceedings of the MICCAI Workshop on Computational Pathology, 2021

A Self-Adaptive Load Balancing Approach for Software-Defined Networks in IoT.
Proceedings of the IEEE International Conference on Autonomic Computing and Self-Organizing Systems, 2021

2020
Time-distanced gates in long short-term memory networks.
Medical Image Anal., 2020

Multi-path x-D recurrent neural networks for collaborative image classification.
Neurocomputing, 2020

Prediction of Type II Diabetes Onset with Computed Tomography and Electronic Medical Records.
Proceedings of the Multimodal Learning for Clinical Decision Support and Clinical Image-Based Procedures, 2020

Automatic Labeling of Cortical Sulci Using Spherical Convolutional Neural Networks in a Developmental Cohort.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Cost-effective Hardware Accelerator Recommendation for Edge Computing.
Proceedings of the 3rd USENIX Workshop on Hot Topics in Edge Computing, 2020

2019
SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth.
IEEE Trans. Medical Imaging, 2019

Splenomegaly Segmentation on Multi-Modal MRI Using Deep Convolutional Networks.
IEEE Trans. Medical Imaging, 2019

3D whole brain segmentation using spatially localized atlas network tiles.
NeuroImage, 2019

Stochastic tissue window normalization of deep learning on computed tomography.
CoRR, 2019

Stratum: A Serverless Framework for the Lifecycle Management of Machine Learning-based Data Analytics Tasks.
Proceedings of the 2019 USENIX Conference on Operational Machine Learning, 2019

Lung cancer detection using co-learning from chest CT images and clinical demographics.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Montage based 3D medical image retrieval from traumatic brain injury cohort using deep convolutional neural network.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Coronary calcium detection using 3D attention identical dual deep network based on weakly supervised learning.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Cortical Surface Parcellation Using Spherical Convolutional Neural Networks.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

STRATUM: A BigData-as-a-Service for Lifecycle Management of IoT Analytics Applications.
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

2018
Algorithmic Enhancements to Data Colocation Grid Frameworks for Big Data Medical Image Processing.
PhD thesis, 2018

Towards Portable Large-Scale Image Processing with High-Performance Computing.
J. Digit. Imaging, 2018

Splenomegaly segmentation using global convolutional kernels and conditional generative adversarial networks.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Improved stability of whole brain surface parcellation with multi-atlas segmentation.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Fully convolutional neural networks improve abdominal organ segmentation.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Adversarial synthesis learning enables segmentation without target modality ground truth.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Technology Enablers for Big Data, Multi-Stage Analysis in Medical Image Processing.
Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

2017
A Data Colocation Grid Framework for Big Data Medical Image Processing - Backend Design.
CoRR, 2017

Cloud Engineering Principles and Technology Enablers for Medical Image Processing-as-a-Service.
Proceedings of the 2017 IEEE International Conference on Cloud Engineering, 2017

Algorithmic Enhancements to Big Data Computing Frameworks for Medical Image Processing.
Proceedings of the 2017 IEEE International Conference on Cloud Engineering, 2017

2016
Reasoning for CPS Education Using Surrogate Simulation Models.
Proceedings of the 40th IEEE Annual Computer Software and Applications Conference, 2016


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