Jerry L. Prince

According to our database1, Jerry L. Prince authored at least 316 papers between 1990 and 2019.

Collaborative distances:

Awards

IEEE Fellow

IEEE Fellow 2004, "For contributions to signal and image processing for medical imaging.".

Timeline

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PhD thesis 
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Bibliography

2019
A Sparse Non-Negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior From MRI.
IEEE Trans. Med. Imaging, 2019

3-D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models.
IEEE Trans. Biomed. Engineering, 2019

Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images.
CMBBE: Imaging & Visualization, 2019

Automatic quality control using hierarchical shape analysis for cerebellum parcellation.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Evaluating the impact of intensity normalization on MR image synthesis.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Cerebellum parcellation with convolutional neural networks.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Large-scale parcellation of the ventricular system using convolutional neural networks.
Proceedings of the Medical Imaging 2019: Biomedical Applications in Molecular, 2019

Projection Artifact Suppression For Inner Retina In Oct Angiography.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

2018
Simulation and Synthesis in Medical Imaging.
IEEE Trans. Med. Imaging, 2018

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.
NeuroImage, 2018

Dictionary-based fiber orientation estimation with improved spatial consistency.
Medical Image Analysis, 2018

Intensity inhomogeneity correction of SD-OCT data using macular flatspace.
Medical Image Analysis, 2018

A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI.
CMBBE: Imaging & Visualization, 2018

Structure and variability in human tongue muscle anatomy.
CMBBE: Imaging & Visualization, 2018

Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

A novel filtering approach for 3D harmonic phase analysis of tagged MRI.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Deformable model reconstruction of the subarachnoid space.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Inverse biomechanical modeling via machine learning and synthetic training data.
Proceedings of the Medical Imaging 2018: Image-Guided Procedures, 2018

A Deep Learning Based Anti-aliasing Self Super-Resolution Algorithm for MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Unpaired Brain MR-to-CT Synthesis Using a Structure-Constrained CycleGAN.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks.
Proceedings of the Understanding and Interpreting Machine Learning in Medical Image Computing Applications, 2018

Cross-Modality Image Synthesis from Unpaired Data Using CycleGAN - Effects of Gradient Consistency Loss and Training Data Size.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

Quantifying Tensor Field Similarity with Global Distributions and Optimal Transport.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Deep Harmonization of Inconsistent MR Data for Consistent Volume Segmentation.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT.
Proceedings of the Computational Pathology and Ophthalmic Medical Image Analysis, 2018

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation.
Proceedings of the Medical Imaging 2018: Biomedical Applications in Molecular, 2018

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas.
Proceedings of the Medical Imaging 2018: Biomedical Applications in Molecular, 2018

Improving self super resolution in magnetic resonance images.
Proceedings of the Medical Imaging 2018: Biomedical Applications in Molecular, 2018

Self super-resolution for magnetic resonance images using deep networks.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multi-layer fast level set segmentation for macular OCT.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
Phase Vector Incompressible Registration Algorithm for Motion Estimation From Tagged Magnetic Resonance Images.
IEEE Trans. Med. Imaging, 2017

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort.
NeuroImage, 2017

Probabilistic tractography using Lasso bootstrap.
Medical Image Analysis, 2017

Random forest regression for magnetic resonance image synthesis.
Medical Image Analysis, 2017

Cross contrast multi-channel image registration using image synthesis for MR brain images.
Medical Image Analysis, 2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging.
Proceedings of the Medical Imaging 2017: Image Processing, 2017

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning.
Proceedings of the Medical Imaging 2017: Image Processing, 2017

A Supervoxel Based Random Forest Synthesis Framework for Bidirectional MR/CT Synthesis.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2017

Whole Brain Segmentation and Labeling from CT Using Synthetic MR Images.
Proceedings of the Machine Learning in Medical Imaging - 8th International Workshop, 2017

Fiber Orientation Estimation Guided by a Deep Network.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2017

Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs.
Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017

Falx Cerebri Segmentation via Multi-atlas Boundary Fusion.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients.
Proceedings of the Patch-Based Techniques in Medical Imaging, 2017

Test suite for image-based motion estimation of the brain and tongue.
Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients.
Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images.
Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Efficient multi-atlas registration using an intermediate template image.
Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Longitudinal analysis of mouse SDOCT volumes.
Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

2016
MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery.
IEEE Trans. Med. Imaging, 2016

Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.
NeuroImage, 2016

Consistent cortical reconstruction and multi-atlas brain segmentation.
NeuroImage, 2016

A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging.
NeuroImage, 2016

Estimation of fiber orientations using neighborhood information.
Medical Image Analysis, 2016

A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation.
Comp. Med. Imag. and Graph., 2016

Effects of spatial resolution on image registration.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Improving cerebellar segmentation with statistical fusion.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Segmentation of thalamus from MR images via task-driven dictionary learning.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Combined registration and motion correction of longitudinal retinal OCT data.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Combining multi-atlas segmentation with brain surface estimation.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes.
Proceedings of the Medical Imaging 2016: Image Processing, 2016

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery.
Proceedings of the Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 27 February, 2016

Incompressible Phase Registration for Motion Estimation from Tagged Magnetic Resonance Images.
Proceedings of the Reconstruction, Segmentation, and Analysis of Medical Images, 2016

Self Super-Resolution for Magnetic Resonance Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.
Proceedings of the Medical Imaging 2016: Computer-Aided Diagnosis, San Diego, California, United States, 27 February, 2016

Voxel based morphometry in optical coherence tomography: validation and core findings.
Proceedings of the Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, California, United States, 27 February, 2016

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

CT and MRI fusion for postimplant prostate brachytherapy evaluation.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Surgical fiducial segmentation and tracking for pose estimation based on ultrasound B-mode images.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

2015
Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.
IEEE J. Biomedical and Health Informatics, 2015

Multimodal Registration via Mutual Information Incorporating Geometric and Spatial Context.
IEEE Trans. Image Processing, 2015

Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6.
Neuroinformatics, 2015

Deformation field correction for spatial normalization of PET images.
NeuroImage, 2015

MR image synthesis by contrast learning on neighborhood ensembles.
Medical Image Analysis, 2015

Segmentation of tongue muscles from super-resolution magnetic resonance images.
Medical Image Analysis, 2015

A Bayesian approach to distinguishing interdigitated tongue muscles from limited diffusion magnetic resonance imaging.
Comp. Med. Imag. and Graph., 2015

A high-resolution atlas and statistical model of the vocal tract from structural MRI.
CMBBE: Imaging & Visualization, 2015

Relating speech production to tongue muscle compressions using tagged and high-resolution magnetic resonance imaging.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Interpretable exemplar-based shape classification using constrained sparse linear models.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Longitudinal graph-based segmentation of macular OCT using fundus alignment.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Multi-output decision trees for lesion segmentation in multiple sclerosis.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Using image synthesis for multi-channel registration of different image modalities.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

B-Mode ultrasound pose recovery via surgical fiducial segmentation and tracking.
Proceedings of the Medical Imaging 2015: Image-Guided Procedures, 2015

Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions.
Proceedings of the Machine Learning in Medical Imaging - 6th International Workshop, 2015

Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study.
Proceedings of the Medical Imaging 2015: Biomedical Applications in Molecular, 2015

Probabilistic fiber tracking using a modified Lasso bootstrap method.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Construction of An Unbiased Spatio-Temporal Atlas of the Tongue During Speech.
Proceedings of the Information Processing in Medical Imaging, 2015

Tree-Encoded Conditional Random Fields for Image Synthesis.
Proceedings of the Information Processing in Medical Imaging, 2015

Temporal Trajectory and Progression Score Estimation from Voxelwise Longitudinal Imaging Measures: Application to Amyloid Imaging.
Proceedings of the Information Processing in Medical Imaging, 2015

2014
Gradient Vector Flow.
Computer Vision, A Reference Guide, 2014

Semi-automatic segmentation for 3D motion analysis of the tongue with dynamic MRI.
Comp. Med. Imag. and Graph., 2014

Patterns of variance in /s/ during normal and glossectomy speech.
CMBBE: Imaging & Visualization, 2014

Smoothing fields of weighted collections with applications to diffusion MRI processing.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Example based lesion segmentation.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

MR to CT registration of brains using image synthesis.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

An adaptive grid for graph-based segmentation in retinal OCT.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression.
Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Determining Functional Units of Tongue Motion via Graph-Regularized Sparse Non-negative Matrix Factorization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Automatic Method for Thalamus Parcellation Using Multi-modal Feature Classification.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation.
Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Deformation Field Correction for Spatial Normalization of PET Images Using a Population-Derived Partial Least Squares Model.
Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Random forest FLAIR reconstruction from T1, T2, and PD-weighted MRI.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Improving magnetic resonance resolution with supervised learning.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging.
Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2013
Magnetic Resonance Image Example-Based Contrast Synthesis.
IEEE Trans. Med. Imaging, 2013

System for Integrated Neuroimaging Analysis and Processing of Structure.
Neuroinformatics, 2013

Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view.
NeuroImage, 2013

Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters.
NeuroImage, 2013

A multiple object geometric deformable model for image segmentation.
Computer Vision and Image Understanding, 2013

Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Automatic cell segmentation in fluorescence images of confluent cell monolayers using multi-object geometric deformable model.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Longitudinal intensity normalization of magnetic resonance images using patches.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Segmentation of retinal OCT images using a random forest classifier.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Pulse sequence based multi-acquisition MR intensity normalization.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Voxel-wise displacement as independent features in classification of multiple sclerosis.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Automated anatomical labeling of the cerebral arteries using belief propagation.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

A dynamic dosimetry system for prostate brachytherapy.
Proceedings of the Medical Imaging 2013: Image-Guided Procedures, 2013

3D Tongue Motion from Tagged and Cine MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Atlas Based Intensity Transformation of Brain MR Images.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

Segmentation of the complete superior cerebellar peduncles using a multi-object geometric deformable model.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

MRI analysis of 3D normal and post-glossectomy tongue motion in speech.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Thalamic parcellation from multi-modal data using random forest learning.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Longitudinal intensity normalization in the presence of multiple sclerosis lesions.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Patch based intensity normalization of brain MR images.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Semi-automatic segmentation of the tongue for 3D motion analysis with dynamic MRI.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Magnetic resonance image synthesis through patch regression.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Deformable registration of macular oct using a-mode scan similarity.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Automated Segmentation of the Cerebellar Lobules Using Boundary Specific Classification and Evolution.
Proceedings of the Information Processing in Medical Imaging, 2013

2012
Model-Based Tomographic Reconstruction of Objects Containing Known Components.
IEEE Trans. Med. Imaging, 2012

Incompressible Deformation Estimation Algorithm (IDEA) From Tagged MR Images.
IEEE Trans. Med. Imaging, 2012

Robust Statistical Fusion of Image Labels.
IEEE Trans. Med. Imaging, 2012

Reconstruction of High-Resolution Tongue Volumes From MRI.
IEEE Trans. Biomed. Engineering, 2012

Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI.
NeuroImage, 2012

Foibles, follies, and fusion: Web-based collaboration for medical image labeling.
NeuroImage, 2012

A computational neurodegenerative disease progression score: Method and results with the Alzheimer's disease neuroimaging initiative cohort.
NeuroImage, 2012

Consistent segmentation using a Rician classifier.
Medical Image Analysis, 2012

Ultrasound-fluoroscopy registration for prostate brachytherapy dosimetry.
Medical Image Analysis, 2012

A fiber tracking method guided by volumetric tract segmentation.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Topology preserving brain tissue segmentation using graph cuts.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Labeling of the cerebellar peduncles using a supervised Gaussian classifier with volumetric tract segmentation.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Simultaneous cortical surface labeling and sulcal curve extraction.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Finding seeds for segmentation using statistical fusion.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Super-resolution reconstruction for tongue MR images.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Deformable registration of the inflated and deflated lung for cone-beam CT-guided thoracic surgery.
Proceedings of the Medical Imaging 2012: Image-Guided Procedures, 2012

Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery.
Proceedings of the Medical Imaging 2012: Image-Guided Procedures, 2012

Fully automatic segmentation of the dentate nucleus using diffusion weighted images.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Automatic sulcal curve extraction with MRF based shape prior.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Vessel centerline tracking and boundary segmentation in coronary MRA with minimal manual interaction.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Hybrid Cone-Beam Tomographic Reconstruction: Incorporation of Prior Anatomical Models to Compensate for Missing Data.
IEEE Trans. Med. Imaging, 2011

REDMAPS: Reduced-Dimensionality Matching for Prostate Brachytherapy Seed Reconstruction.
IEEE Trans. Med. Imaging, 2011

Multi-parametric neuroimaging reproducibility: A 3-T resource study.
NeuroImage, 2011

Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis.
NeuroImage, 2011

Direct segmentation of the major white matter tracts in diffusion tensor images.
NeuroImage, 2011

Editorial.
Medical Image Analysis, 2011

Statistical fusion of continuous labels: identification of cardiac landmarks.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Intensity inhomogeneity correction of magnetic resonance images using patches.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Effect of regularization parameter and scan time on crossing fibers with constrained compressed sensing.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Distance transforms in multi channel MR image registration.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Foibles, follies, and fusion: assessment of statistical label fusion techniques for web-based collaborations using minimal training.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Deformable Registration of High-Resolution and Cine MR Tongue Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Point-to-Volume Registration of Prostate Implants to Ultrasound.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Compressed sensing based intensity non-uniformity correction.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Topology preserving automatic segmentation of the spinal cord in magnetic resonance images.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

A Compressed Sensing Approach for MR Tissue Contrast Synthesis.
Proceedings of the Information Processing in Medical Imaging, 2011

2010
Shortest Path Refinement for Motion Estimation From Tagged MR Images.
IEEE Trans. Med. Imaging, 2010

Digital Topology in Brain Imaging.
IEEE Signal Process. Mag., 2010

Erratum to: The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software.
Neuroinformatics, 2010

The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software.
Neuroinformatics, 2010

Longitudinal changes in cortical thickness associated with normal aging.
NeuroImage, 2010

Robust deformable image registration using prior shape information for atlas to patient registration.
Comp. Med. Imag. and Graph., 2010

Synthesizing MR contrast and resolution through a patch matching technique.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Simultaneous truth and performance level estimation with incomplete, over-complete, and ancillary data.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Statistical fusion of surface labels provided by multiple raters.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Automatic segmentation of seeds and fluoroscope tracking (FTRAC) fiducial in prostate brachytherapy x-ray images.
Proceedings of the Medical Imaging 2010: Visualization, 2010

A novel contrast for DTI visualization for thalamus delineation.
Proceedings of the Medical Imaging 2010: Visualization, 2010

Identification of myocardial infarction using three-dimensional strain tensor fractional anisotropy.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

MR contrast synthesis for lesion segmentation.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

MRI-based prostate brachytherapy seed localization.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

C-arm pose estimation using a set of coplanar ellipses in correspondence.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Topology-preserving STAPLE.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009
Prostate Brachytherapy Seed Reconstruction With Gaussian Blurring and Optimal Coverage Cost.
IEEE Trans. Med. Imaging, 2009

Digital Topology on Adaptive Octree Grids.
Journal of Mathematical Imaging and Vision, 2009

3D Topology Preserving Flows for Viewpoint-Based Cortical Unfolding.
International Journal of Computer Vision, 2009

A Moving Grid Framework for Geometric Deformable Models.
International Journal of Computer Vision, 2009

Mjolnir: Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration.
Int. J. Biomedical Imaging, 2009

Shortest path refinement For HARP motion tracking.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Prostate brachytherapy seed localization using a mobile C-arm without tracking.
Proceedings of the Medical Imaging 2009: Visualization, 2009

Incompressible Cardiac Motion Estimation of the Left Ventricle Using Tagged MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Optimal Matching for Prostate Brachytherapy Seed Localization with Dimension Reduction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Belief Propagation Based Segmentation of White Matter Tracts in DTI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Reduced-Dimensionality Matching for 3-D Reconstruction of Prostate Brachytherapy Implants from Incomplete Data.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Truharp: Single Breath-Hold MRI for High Resolution Cardiac Motion and Strain Quantification.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008
A Geometry-Driven Optical Flow Warping for Spatial Normalization of Cortical Surfaces.
IEEE Trans. Med. Imaging, 2008

Direct three-dimensional myocardial strain tensor quantification and tracking using zHARP.
Medical Image Analysis, 2008

Prostate Brachytherapy Seed Localization with Gaussian Blurring and Camera Self-calibration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Automated reliable labeling of the cortical surface.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Fuzzy c-means with variable compactness.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Tomosynthesis-based radioactive seed localization in prostate brachytherapy using modified distance map images.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Robust maximum likelihood estimation in Q-space MRI.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Automatically identifying white matter tracts using cortical labels.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

A multi-compartment segmentation framework with homeomorphic level sets.
Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2008

CTREC: C-arm tracking and reconstruction using elliptic curves.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2008

2007
Real-Time Monitoring of Cardiac Regional Function Using FastHARP MRI and Region-of-Interest Reconstruction.
IEEE Trans. Biomed. Engineering, 2007

Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T.
NeuroImage, 2007

Toward Optimal Matching for 3D Reconstruction of Brachytherapy Seeds.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Statistical Atlases of Bone Anatomy: Construction, Iterative Improvement and Validation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Harp Tracking Refinement Using Seeded Region Growing.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

A Joint Registration and Segmentation Approach to Skull Stripping.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Three-Point Method for Fast and Robust Field Mapping for Epi Geometric Distortion Correction.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Fast Motion Imaging Using Reduced Field of View Partial Fourier MRI.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Octree Grid Topology Preserving Geometric Deformable Model for Three-Dimensional Medical Image Segmentation.
Proceedings of the Information Processing in Medical Imaging, 2007

Multi-slice Three-Dimensional Myocardial Strain Tensor Quantification Using z HARP.
Proceedings of the Information Processing in Medical Imaging, 2007

Diffusion Tensor Estimation by Maximizing Rician Likelihood.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

Topology-preserving Geometric Deformable Model on Adaptive Quadtree Grid.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

2006
Cortical reconstruction using implicit surface evolution: Accuracy and precision analysis.
NeuroImage, 2006

Mjolnir: deformable image registration using feature diffusion.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Theoretical framework for analyzing MR imaging of dynamic objects using filters and downsamplers.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Atlas-assisted tomography: registration of a deformable atlas to compensate for limited-angle cone-beam trajectory.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Tracking tongue motion in three dimensions using tagged MR image.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Automatic estimation of midsagittal plane and AC-PC alignment on nonrigid registration.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Octree-Based Topology-Preserving Isosurface Simplification.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2006

2005
Fast tracking of cardiac motion using 3D-HARP.
IEEE Trans. Biomed. Engineering, 2005

Super-resolved multi-channel fuzzy segmentation of MR brain images.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Using the Fast Marching Method to Extract Curves with Given Global Properties.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Fully Truncated Cone-Beam Reconstruction on Pi Lines Using Prior CT.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Cortical Surface Alignment Using Geometry Driven Multispectral Optical Flow.
Proceedings of the Information Processing in Medical Imaging, 2005

ZHARP: Three-Dimensional Motion Tracking from a Single Image Plane.
Proceedings of the Information Processing in Medical Imaging, 2005

A Hybrid Eulerian-Lagrangian Approach for Thickness, Correspondence, and Gridding of Annular Tissues.
Proceedings of the Computer Vision for Biomedical Image Applications, 2005

Exact 3D cone-beam reconstruction from two short-scans using a C-arm imaging system.
Proceedings of the Computational Imaging III, San Jose, 2005

2004
Regenerating MR tagged images using harmonic phase (HARP) methods.
IEEE Trans. Biomed. Engineering, 2004

Cortical Reconstruction Using Implicit Surface Evolution: A Landmark Validation Study.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

An Automated Method for Finding Curves of Sulcal Fundi On Human Cortical Surfaces.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Imaging the Evolution of Three-Dimensional Myocardial Strains using a Fast MR Imaging Technique.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Exact 3D Cone-Beam Reconstruction From Projections Obtained Over a Wobble Trajectory on a C-ARM.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Robust Unsupervised Tissue Classification in MR Images.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Dynamic Range of Harmonic Phase Magnetic Resonance Imaging (HARP-MRI).
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

2003
An Eulerian PDE Approach for Computing Tissue Thickness.
IEEE Trans. Med. Imaging, 2003

A Topology Preserving Level Set Method for Geometric Deformable Models.
IEEE Trans. Pattern Anal. Mach. Intell., 2003

Automatic classification of sulcal regions of the human brain cortex using pattern recognition.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Spatiotemporal visualization of the tongue surface using ultrasound and kriging.
Proceedings of the Medical Imaging 2003: Visualization, 2003

Tool for automatic real-time regional cardiac function analysis using HARP.
Proceedings of the Medical Imaging 2003: Visualization, 2003

Mapping Techniques for Aligning Sulci across Multiple Brains.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Tomographic Reconstruction for Truncated Cone Beam Data Using Prior CT Information.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Algorithms for Real-Time FastHARP Cardiac Function Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Visualization of Myocardial Motion Using MICSR Trinary Checkerboard Display.
Proceedings of the Information Processing in Medical Imaging, 2003

A 2D Moving Grid Geometric Deformable Model.
Proceedings of the 2003 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2003), 2003

2002
Using a Statistical Shape Model to Extract Sulcal Curves on the Outer Cortex of the Human Brain.
IEEE Trans. Med. Imaging, 2002

Topology Correction in Brain Cortex Segmentation Using a Multi-Scale, Graph-Based Algorithm.
IEEE Trans. Med. Imaging, 2002

Assisted labeling techniques for the human brain cortex.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

New approaches for measuring changes in the cortical surface using an automatic reconstruction algorithm.
Proceedings of the Medical Imaging 2002: Image Processing, 2002

A phantom validation of the FastHARP pulse sequence.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

A PDE Approach for Thickness, Correspondence, and Gridding of Annular Tissues.
Proceedings of the Computer Vision, 2002

2001
Hemispherical map for the human brain cortex.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Automatic segmentation editing for cortical surface reconstruction.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Statistical Study on Cortical Sulci of Human Brains.
Proceedings of the Information Processing in Medical Imaging, 2001

Graph-Based Topology Correction for Brain Cortex Segmentation.
Proceedings of the Information Processing in Medical Imaging, 2001

A PDE Approach for Measuring Tissue Thickness.
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001

A Topology Preserving Deformable Model Using Level Sets.
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001

2000
Imaging Heart Motion Using Harmonic Phase MRI.
IEEE Trans. Med. Imaging, 2000

On the optimality of recursive unbiased state estimation with unknown inputs.
Automatica, 2000

Quantitative validation of a deformable cortical surface model.
Proceedings of the Medical Imaging 2000: Image Processing, 2000

On the Design of the Bandpass Filters in Harmonic Phase MRI.
Proceedings of the 2000 International Conference on Image Processing, 2000

1999
The kriging update model and recursive space-time function estimation.
IEEE Trans. Signal Processing, 1999

Reconstruction of the Human Cerebral Cortex from Magnetic Resonance Images.
IEEE Trans. Med. Imaging, 1999

Adaptive Fuzzy Segmentation of Magnetic Resonance Images.
IEEE Trans. Med. Imaging, 1999

An adaptive fuzzy C-means algorithm for image segmentation in the presence of intensity inhomogeneities.
Pattern Recognition Letters, 1999

Tracking MR tag surfaces using a spatiotemporal filter and interpolator.
Int. J. Imaging Systems and Technology, 1999

Automated Segmentation of Sulcal Regions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

An Adaptive Fuzzy Segmentation Algorithm for Three-Dimensional Magnetic Resonance Images.
Proceedings of the Information Processing in Medical Imaging, 1999

1998
Snakes, shapes, and gradient vector flow.
IEEE Trans. Image Processing, 1998

Generalized gradient vector flow external forces for active contours.
Signal Processing, 1998

Cardiac material markers from tagged MR images.
Medical Image Analysis, 1998

Adaptive fuzzy c-means algorithm for image segmentation in the presence of intensity inhomogeneities.
Proceedings of the Medical Imaging 1998: Image Processing, 1998

Reconstruction of the Central Layer of the Human Cerebral Cortex from MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

Partial Volume Estimation and the Fuzzy C-means Algorithm.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998

Angle Images for Measuring Heart Motion from Tagged MRI.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998

MR Tag Surface Tracking using a Spatio-temporal Filter/Interpolator.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998

1997
An Automated Technique for Statistical Characterization of Brain Tissues in Magnetic Resonance Imaging.
IJPRAI, 1997

Finding the Brain Cortex Using Fuzzy Segmentation, Isosurfaces, and Deformable Surface Models.
Proceedings of the Information Processing in Medical Imaging, 1997

Generating 3-D Cardiac Material Markers Using Tagged MRI.
Proceedings of the Information Processing in Medical Imaging, 1997

Reconstruction of Vector Fields in Bounded Domain Vector Tomography.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

Bandpass Optical Flow for Tagged MR Imaging.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997

Gradient Vector Flow: A New External Force for Snakes.
Proceedings of the 1997 Conference on Computer Vision and Pattern Recognition (CVPR '97), 1997

1996
A vector Wiener filter for dual-radionuclide imaging.
IEEE Trans. Med. Imaging, 1996

Image registration based on boundary mapping.
IEEE Trans. Med. Imaging, 1996

Convolution backprojection formulas for 3-D vector tomography with application to MRI.
IEEE Trans. Image Processing, 1996

Morphological Analysis of Brain Structures Using Spatial Normalization.
Proceedings of the Visualization in Biomedical Computing, 4th International Conference, 1996

On div-curl regularization for motion estimation in 3-D volumetric imaging.
Proceedings of the Proceedings 1996 International Conference on Image Processing, 1996

Experiments in multiresolution motion estimation for multifrequency tagged cardiac MR images.
Proceedings of the Proceedings 1996 International Conference on Image Processing, 1996

Convexity Analysis of Active Contour Problems.
Proceedings of the 1996 Conference on Computer Vision and Pattern Recognition (CVPR '96), 1996

1995
Reconstruction of 3-D left ventricular motion from planar tagged cardiac MR images: an estimation theoretic approach.
IEEE Trans. Med. Imaging, 1995

An active contour model for mapping the cortex.
IEEE Trans. Med. Imaging, 1995

A frequency domain performance analysis of Horn and Schunck's optical flow algorithm for deformable motion.
IEEE Trans. Image Processing, 1995

Stochastic formulations of optical flow algorithms under variable brightness conditions.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995

1994
Tag and contour detection in tagged MR images of the left ventricle.
IEEE Trans. Med. Imaging, 1994

Tomographic reconstruction of 3-D vector fields using inner product probes.
IEEE Trans. Image Processing, 1994

Optimal brightness functions for optical flow estimation of deformable motion.
IEEE Trans. Image Processing, 1994

A Convolution Backprojection Formula for Three-Dimensional Vector Tomography.
Proceedings of the Proceedings 1994 International Conference on Image Processing, 1994

Optimal Tag Pattern Validation using Magnetic Resonance Imaging.
Proceedings of the Proceedings 1994 International Conference on Image Processing, 1994

1993
Hierarchical reconstruction using geometry and sinogram restoration.
IEEE Trans. Image Processing, 1993

Tomographic reconstruction of 3-D vector fields.
Proceedings of the IEEE International Conference on Acoustics, 1993

Optimal brightness patterns for 2-D optical flow.
Proceedings of the IEEE International Conference on Acoustics, 1993

Adaptive active contour algorithms for extracting and mapping thick curves.
Proceedings of the Conference on Computer Vision and Pattern Recognition, 1993

1992
Motion estimation from tagged MR image sequences.
IEEE Trans. Med. Imaging, 1992

1991
Convex set reconstruction using prior shape information.
CVGIP: Graphical Model and Image Processing, 1991

1990
Reconstructing Convex Sets from Support Line Measurements.
IEEE Trans. Pattern Anal. Mach. Intell., 1990

Image analysis methods for tagged MRI cardiac studies.
Proceedings of the Medical Imaging IV: Image Processing, 1990


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