Simon K. Warfield

According to our database1, Simon K. Warfield authored at least 238 papers between 1996 and 2019.

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2019
A registration method for improving quantitative assessment in probabilistic diffusion tractography.
NeuroImage, 2019

Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations.
NeuroImage, 2019

Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images.
NeuroImage, 2019

Changes in neonatal regional brain volume associated with preterm birth and perinatal factors.
NeuroImage, 2019

Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation.
Medical Image Analysis, 2019

Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection.
IEEE Access, 2019

Non-learning based deep parallel MRI reconstruction (NLDpMRI).
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets: Application to IsoIntense Infant Brain MRI Segmentation.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

2018
A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Semi-automated Extraction of Crohns Disease MR Imaging Markers Using a 3D Residual CNN with Distance Prior.
Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Real-time automatic fetal brain extraction in fetal MRI by deep learning.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Automatic renal segmentation in DCE-MRI using convolutional neural networks.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

A Comparison of Point and Complete Electrode Models in a Finite Difference Model of Invasive Electrode Measurements.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Missing Slice Recovery for Tensors Using a Low-Rank Model in Embedded Space.
Proceedings of the 2018 IEEE Conference on Computer Vision and Pattern Recognition, 2018

2017
A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans.
IEEE Trans. Med. Imaging, 2017

Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions.
IEEE Trans. Med. Imaging, 2017

Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging.
IEEE Trans. Med. Imaging, 2017

Automated template-based brain localization and extraction for fetal brain MRI reconstruction.
NeuroImage, 2017

Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis.
NeuroImage, 2017

Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI.
NeuroImage, 2017

A new neonatal cortical and subcortical brain atlas: the Melbourne Children's Regional Infant Brain (M-CRIB) atlas.
NeuroImage, 2017

Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation.
Medical Image Analysis, 2017

Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices.
Proceedings of the Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 2017

Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging.
Proceedings of the Information Processing in Medical Imaging, 2017

Localization of stereo-electroencephalography signals using a finite difference complete electrode model.
Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

2016
Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking.
IEEE Trans. Med. Imaging, 2016

Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices.
IEEE J. Biomedical and Health Informatics, 2016

Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI.
Medical Image Analysis, 2016

Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Evaluation of numerical techniques for solving the current injection problem in biological tissues.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015
A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation.
IEEE Trans. Med. Imaging, 2015

Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information.
IEEE J. Biomedical and Health Informatics, 2015

Improved fidelity of brain microstructure mapping from single-shell diffusion MRI.
Medical Image Analysis, 2015

Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME).
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Structural and diffusion weighted MRI registration for biomarker fusion in Crohn's disease diagnosis.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

A template-to-slice block matching approach for automatic localization of brain in fetal MRI.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Symmetric block-matching registration for the distortion correction of Echo-Planar images.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Accelerated High Spatial Resolution Diffusion-Weighted Imaging.
Proceedings of the Information Processing in Medical Imaging, 2015

A Framework for the Analysis of Diffusion Compartment Imaging (DCI).
Proceedings of the Visualization and Processing of Higher Order Descriptors for Multi-Valued Data, 2015

2014
A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure.
IEEE Trans. Med. Imaging, 2014

A Logarithmic Opinion Pool Based STAPLE Algorithm for the Fusion of Segmentations With Associated Reliability Weights.
IEEE Trans. Med. Imaging, 2014

Voxel-Based Dipole Orientation Constraints for Distributed Current Estimation.
IEEE Trans. Biomed. Engineering, 2014

Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia.
NeuroImage, 2014

A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images.
Medical Image Analysis, 2014

Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy.
Int. J. Comput. Assist. Radiol. Surg., 2014

A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn's Disease.
Proceedings of the Abdominal Imaging. Computational and Clinical Applications, 2014

Optimal MAP Parameters Estimation in STAPLE - Learning from Performance Parameters versus Image Similarity Information.
Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Four Neuroimaging Questions that P-Values Cannot Answer (and Bayesian Analysis Can).
Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2013
Cortical Graph Smoothing: A Novel Method for Exploiting DWI-Derived Anatomical Brain Connectivity to Improve EEG Source Estimation.
IEEE Trans. Med. Imaging, 2013

Simultaneous Truth and Performance Level Estimation Through Fusion of Probabilistic Segmentations.
IEEE Trans. Med. Imaging, 2013

Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: Perinatal predictors and functional significance at age 7.
NeuroImage, 2013

Reliable estimation of incoherent motion parametric maps from diffusion-weighted MRI using fusion bootstrap moves.
Medical Image Analysis, 2013

Estimation of a Multi-fascicle Model from Single B-Value Data with a Population-Informed Prior.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Spatially Constrained Incoherent Motion (SCIM) Model Improves Quantitative Diffusion-Weighted MRI Analysis of Crohn's Disease Patients.
Proceedings of the Abdominal Imaging. Computation and Clinical Applications, 2013

Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-Weighted Imaging (DIAMOND).
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Improved Multi B-Value Diffusion-Weighted MRI of the Body by Simultaneous Model Estimation and Image Reconstruction (SMEIR).
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error.
Proceedings of the Information Processing in Medical Imaging, 2013

2012
Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE.
IEEE Trans. Med. Imaging, 2012

Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing.
Neuroinformatics, 2012

Corpus callosum alterations in very preterm infants: Perinatal correlates and 2 year neurodevelopmental outcomes.
NeuroImage, 2012

Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.
NeuroImage, 2012

Anisotropic partial volume CSF modeling for EEG source localization.
NeuroImage, 2012

Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly.
NeuroImage, 2012

Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions.
Medical Image Analysis, 2012

Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI.
Int. J. Biomedical Imaging, 2012

A generalized correlation coefficient: Application to DTI and multi-fiber DTI.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic acquisitions.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Polyaffine parametrization of image registration based on geodesic flows.
Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Registration and Analysis of White Matter Group Differences with a Multi-fiber Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Reliable Assessment of Perfusivity and Diffusivity from Diffusion Imaging of the Body.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Population intensity outliers or a new model for brain WM abnormalities.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Interpolating multi-fiber models by Gaussian mixture simplification.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Retrospective local artefacts detection in diffusion-weighted images using the Random Sample Consensus (RANSAC) paradigm.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Whole brain group network analysis using network bias and variance parameters.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy.
IEEE Trans. Med. Imaging, 2011

Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI.
NeuroImage, 2011

Fetal brain volumetry through MRI volumetric reconstruction and segmentation.
Int. J. Comput. Assist. Radiol. Surg., 2011

Learning Likelihoods for Labeling (L3): A General Multi-Classifier Segmentation Algorithm.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Spatially Adaptive Log-Euclidean Polyaffine Registration Based on Sparse Matches.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Left Ventricular Segmentation Challenge from Cardiac MRI: A Collation Study.
Proceedings of the Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges, 2011

Super-Resolution in Diffusion-Weighted Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Abdominal Images Non-rigid Registration Using Local-Affine Diffeomorphic Demons.
Proceedings of the Abdominal Imaging. Computational and Clinical Applications, 2011

Quantitative Body DW-MRI Biomarkers Uncertainty Estimation Using Unscented Wild-Bootstrap.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

SoftSTAPLE: Truth and performance-level estimation from probabilistic segmentations.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

A new classifier feature space for an improved Multiple Sclerosis lesion segmentation.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Automated detection of white matter fiber bundles.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Toward an accurate multi-fiber assessment strategy for clinical practice.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Anisotropic equivalent conductivity tensors for bioelectric modeling of partial volume effects in cerebrospinal fluid spaces.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Demons registration with local affine adaptive regularization: application to registration of abdominal structures.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Cortical brain structures segmentation using constrained optimization and intensity coupling.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

2010
Robust Super-Resolution Volume Reconstruction From Slice Acquisitions: Application to Fetal Brain MRI.
IEEE Trans. Med. Imaging, 2010

Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee.
IEEE Trans. Med. Imaging, 2010

Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery.
J. Computational Applied Mathematics, 2010

Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Incorporating Priors on Expert Performance Parameters for Segmentation Validation and Label Fusion: A Maximum a Posteriori STAPLE.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Why multiple b-values are required for multi-tensor models: evaluation with a constrained log-Euclidean model.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Measuring effects of latency in brain activity with FMRI.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Controllable spatio-temporal smoothness constraints for EEG source localization.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009
Reproducibility of Laplacian Wall Thickness Measurements of the Gallbladder with Varying CT Slice Thickness.
Signal Processing Systems, 2009

A Continuous STAPLE for Scalar, Vector, and Tensor Images: An Application to DTI Analysis.
IEEE Trans. Med. Imaging, 2009

Automatic segmentation of newborn brain MRI.
NeuroImage, 2009

EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model.
NeuroImage, 2009

Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms.
Medical Image Analysis, 2009

Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

A Data-Driven Approach to Discovering Common Brain Anatomy.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Improved Registration for Large Electron Microscopy Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from Staple.
Proceedings of the Information Processing in Medical Imaging, 2009

2008
A unified framework for clustering and quantitative analysis of white matter fiber tracts.
Medical Image Analysis, 2008

A quantitative assessment of approaches to mesh generation for surgical simulation.
Eng. Comput. (Lond.), 2008

EEG to MRI Registration Based on Global and Local Similarities of MRI Intensity Distributions.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures.
Proceedings of the Advances in Visual Computing, 4th International Symposium, 2008

Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI.
NeuroImage, 2007

Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain.
NeuroImage, 2007

Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery.
NeuroImage, 2007

A fuzzy system for helping medical diagnosis of malformations of cortical development.
Journal of Biomedical Informatics, 2007

Computational Brain Tumours.
ERCIM News, 2007

Estimation of the deformations induced by articulated bodies: Registration of the spinal column.
Biomed. Signal Proc. and Control, 2007

Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Application-Driven Quantitative Assessment of Approaches to Mesh Generation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Automatic Segmentation of the Bones from Mr Images of The Knee.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Evaluation of Brain Image Nonrigid Registration Algorithms Based on Log-euclidean Mr-dti Consistency Measures.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts.
Proceedings of the Information Processing in Medical Imaging, 2007

Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery.
Proceedings of the Computational Science, 2007

2006
Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI.
NeuroImage, 2006

Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

XFEM-based modeling of successive resections for preoperative image updating.
Proceedings of the Medical Imaging 2006: Visualization, 2006

A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages.
Proceedings of the Medical Imaging 2006: Visualization, 2006

Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery.
Proceedings of the Medical Imaging 2006: Visualization, 2006

Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Validation of Image Segmentation by Estimating Rater Bias and Variance.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Segmentation of newborn brain MRI.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Statistical modeling and EM clustering of white matter fiber tracts.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Automatic Segmentation of the Knee Bones using 3D Active Shape Models.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006

On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study.
Proceedings of the 12th International Conference on Parallel and Distributed Systems, 2006

2005
Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation.
IEEE Trans. Med. Imaging, 2005

Robust nonrigid registration to capture brain shift from intraoperative MRI.
IEEE Trans. Med. Imaging, 2005

Efficient multi-modal dense field non-rigid registration: alignment of histological and section images.
Medical Image Analysis, 2005

Capturing intraoperative deformations: research experience at Brigham and Women's hospital.
Medical Image Analysis, 2005

An EM algorithm for shape classification based on level sets.
Medical Image Analysis, 2005

Brain Shift Computation Using a Fully Nonlinear Biomechanical Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Hybrid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Spectral Clustering Algorithms for Ultrasound Image Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

An articulated registration method.
Proceedings of the 2005 International Conference on Image Processing, 2005

Multi-subject variational registration for probabilistic unbiased atlas generation.
Proceedings of the 2005 International Conference on Image Processing, 2005

A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery.
Proceedings of the Computational Science, 2005

Medical Image Analysis for Image Guided Therapy.
Proceedings of the International Conference on Digital Image Computing: Techniques and Applications, 2005

Automatic Initialization of 3D Deformable Models for Cartilage Segmentation.
Proceedings of the International Conference on Digital Image Computing: Techniques and Applications, 2005

3D Statistical Shape Models to Embed Spatial Relationship Information.
Proceedings of the Computer Vision for Biomedical Image Applications, 2005

2004
Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.
IEEE Trans. Med. Imaging, 2004

Improved watershed transform for medical image segmentation using prior information.
IEEE Trans. Med. Imaging, 2004

Dense deformation field estimation for brain intraoperative images registration.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Improved Non-rigid Registration of Prostate MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

A Prospective Multi-institutional Study of the Reproducibility of fMRI: A Preliminary Report from the Biomedical Informatics Research Network.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Level Set Methods in an EM Framework for Shape Classification and Estimation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Coupling Statistical Segmentation and PCA Shape Modeling.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE).
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

An Anisotropic Material Model for Image Guided Neurosurgery.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

: Multi-subject Registration for Unbiased Statistical Atlas Construction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

In Silico Tumor Growth: Application to Glioblastomas.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

On Extended Finite Element Method (XFEM) for Modelling of Organ Deformations Associated with Surgical Cuts.
Proceedings of the Medical Simulation: International Symposium, 2004

Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Multi-Modal Non-Rigid Registration Using a Stochastic Gradient Approximation.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Validation of 3D assessment of MR imaging-guided percutaneous cryotherapy of a soft-tissue metastasis.
Proceedings of the CARS 2004. Computer Assisted Radiology and Surgery. Proceedings of the 18th International Congress and Exhibition, 2004

2003
Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans.
IEEE Trans. Biomed. Engineering, 2003

A New Technique for Multi-modal 3D Image Registration.
Proceedings of the Biomedical Image Registration, Second International Workshop, 2003

Augmenting intraoperative MRI with preoperative fMRI and DTI by biomechanical simulation of brain deformation.
Proceedings of the Medical Imaging 2003: Visualization, 2003

Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Geostatistical Medical Image Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

Capturing Brain Deformation.
Proceedings of the Surgery Simulation and Soft Tissue Modeling, International Symposium, 2003

K-Voronoi diagrams computing in arbitrary domains.
Proceedings of the 2003 International Conference on Image Processing, 2003

Occlusion points propagation geodesic distance transformation.
Proceedings of the 2003 International Conference on Image Processing, 2003

An Efficient Algorithm for Multiple Sclerosis Segmentation from Brain MRI.
Proceedings of the Computer Aided Systems Theory, 2003

2002
Nonrigid registration of 3D tensor medical data.
Medical Image Analysis, 2002

Serial registration of intraoperative MR images of the brain.
Medical Image Analysis, 2002

Statistical Validation of Automated Probabilistic Segmentation against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Labeling the Brain Surface Using a Deformable Multiresolution Mesh.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

Simultaneous validation of image segmentation and assessment of expert quality [tumor MRI application].
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

Deformable registration of DT-MRI data based on transformation invariant tensor characteristics.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002

Multimodale nicht-rigide Registrierung von Ultraschall und MR-Bilddaten unter Verwendung eines biomechanischen Modells.
Proceedings of the Bildverarbeitung für die Medizin 2002: Algorithmen, 2002

Automatic Nonrigid Registration for Tracking Brain Shift During Neurosurgery.
Proceedings of the Bildverarbeitung für die Medizin 2002: Algorithmen, 2002

2001
Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model.
IEEE Trans. Med. Imaging, 2001

Multiresolution parameterization of meshes for improved surface-based registration.
Proceedings of the Medical Imaging 2001: Image Processing, 2001

Real-time simulation and visualization of volumetric brain deformation for image-guided neurosurgery.
Proceedings of the Medical Imaging 2001: Visualization, 2001

Medical image segmentation using high-performance computer clusters.
Proceedings of the Medical Imaging 2001: Visualization, 2001

A Binary Entropy Measure to Assess Nonrigid Registration Algorithms.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

A Novel Nonrigid Registration Algorithm and Applications.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: A Generic Approach.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Multiresolution Signal Processing on Meshes for Automatic Pathological Shape Characterization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

Surface Based Atlas Matching of the Brain Using Deformable Surfaces and Volumetric Finite Elements.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001

High Performance Computing in Image Guided Therapy: Computer Assisted Three-Dimensional Planning and Real-Time Navigation for Neurosurgical Procedures.
Proceedings of the Bildverarbeitung für die Medizin 2001: Algorithmen, 2001

2000
Adaptive, template moderated, spatially varying statistical classification.
Medical Image Analysis, 2000

Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery.
Proceedings of the Proceedings Supercomputing 2000, 2000

Intraoperative Segmentation and Nonrigid Registration for Image Guided Therapy.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2000

Deformable Modeling for Characterizing Biomedical Shape Changes.
Proceedings of the Discrete Geometry for Computer Imagery, 9th International Conference, 2000

1999
Fractional Segmentation of White Matter.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

Segmentation of Meningiomas and Low Grade Gliomas in MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

A Volumetric Optical Flow Method for Measurement of Brain Deformation from Intraoperative Magnetic Resonance Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

3D Image Matching Using a Finite Element Based Elastic Deformation Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

Adaptive Template Moderated Brain Tumor Segmentation in MRI.
Proceedings of the Bildverarbeitung für die Medizin 1999: Algorithmen, 1999

1998
A High Performance Computing Approach to the Registration of Medical Imaging Data.
Parallel Computing, 1998

Real-Time Image Segmentation for Image-Guided Surgery.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1998

Tensor Controlled Local Structure Enhancement of CT Images for Bone Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

Adaptive Template Moderated Spatially Varying Statistical Classification.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-guided Brain Surgery.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1998

1996
Fast k-NN classification for multichannel image data.
Pattern Recognition Letters, 1996


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