Sophie Barbe

According to our database, Sophie Barbe authored at least 16 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Scalable Coupling of Deep Learning with Logical Reasoning.

Marianne Defresne, Sophie Barbe, Thomas Schiex

Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023

2021

Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods.

Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex

Algorithms, 2021

2020

Positive multistate protein design.

Jelena Vucinic, David Simoncini, Manon Ruffini, Sophie Barbe, Thomas Schiex

Bioinform., 2020

2019

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems.

Antoine Charpentier, David Mignon, Sophie Barbe, Juan Cortés, Thomas Schiex, Thomas Simonson, David Allouche

J. Chem. Inf. Model., 2019

A structural homology approach for computational protein design with flexible backbone.

David Simoncini, Kam Y. J. Zhang, Thomas Schiex, Sophie Barbe

Bioinform., 2019

Guaranteed Diversity & Quality for the Weighted CSP.

Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex

Proceedings of the 31st IEEE International Conference on Tools with Artificial Intelligence, 2019

2018

Cost function network-based design of protein-protein interactions: predicting changes in binding affinity.

Clément Viricel, Simon de Givry, Thomas Schiex, Sophie Barbe

Bioinform., 2018

Fitness landscape analysis around the optimum in computational protein design.

David Simoncini, Sophie Barbe, Thomas Schiex, Sébastien Vérel

Proceedings of the Genetic and Evolutionary Computation Conference, 2018

2016

Fast search algorithms for computational protein design.

Seydou Traoré, Kyle E. Roberts, David Allouche, Bruce Randall Donald, Isabelle André, Thomas Schiex, Sophie Barbe

J. Comput. Chem., 2016

Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure.

Clément Viricel, David Simoncini, Sophie Barbe, Thomas Schiex

Proceedings of the Principles and Practice of Constraint Programming, 2016

2015

Approximate Counting with Deterministic Guarantees for Affinity Computation.

Clément Viricel, David Simoncini, David Allouche, Simon de Givry, Sophie Barbe, Thomas Schiex

Proceedings of the Modelling, Computation and Optimization in Information Systems and Management Sciences - Proceedings of the 3rd International Conference on Modelling, Computation and Optimization in Information Systems and Management Sciences, 2015

2014

Computational protein design as an optimization problem.

David Allouche, Isabelle André, Sophie Barbe, Jessica Davies, Simon de Givry, George Katsirelos, Barry O'Sullivan, Steven D. Prestwich, Thomas Schiex, Seydou Traoré

Artif. Intell., 2014

2013

A new framework for computational protein design through cost function network optimization.

Seydou Traoré, David Allouche, Isabelle André, Simon de Givry, George Katsirelos, Thomas Schiex, Sophie Barbe

Bioinform., 2013

2012

Computational Protein Design as a Cost Function Network Optimization Problem.

David Allouche, Seydou Traoré, Isabelle André, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex

Proceedings of the Principles and Practice of Constraint Programming, 2012

2011

Encoding Molecular Motions in Voxel Maps.

Juan Cortés, Sophie Barbe, Monique Erard, Thierry Siméon

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

2008

<i>Ab initio</i> determination of the flexibility of 2'-aminoribonucleosides and 2'-aminoarabinonucleosides inserted in duplexes.

Sophie Barbe, Marc Le Bret

J. Comput. Chem., 2008