Sriram P. Chockalingam

According to our database, Sriram P. Chockalingam authored at least 23 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Datasets for evaluating SCEMENT: Scalable and Memory Efficient Integration of Large-scale Single Cell RNA-sequencing Data.

Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru

Dataset, June, 2024

2022

EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks.

Maneesha Aluru, Harsh Shrivastava, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru

Bioinform., 2022

2021

Parallel construction of module networks.

Ankit Srivastava, Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru

Proceedings of the International Conference for High Performance Computing, 2021

2020

Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings.

Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru

J. Parallel Distributed Comput., 2020

An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction.

Sriram P. Chockalingam, Jodh Pannu, Sahar Hooshmand, Sharma V. Thankachan, Srinivas Aluru

BMC Bioinform., 2020

A parallel framework for constraint-based bayesian network learning via markov blanket discovery.

Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the International Conference for High Performance Computing, 2020

2018

Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis.

Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the Research in Computational Molecular Biology, 2018

A Parallel Algorithm for Bayesian Network Inference Using Arithmetic Circuits.

Md. Vasimuddin, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018

An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction.

Jodh Pannu, Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

A greedy alignment-free distance estimator for phylogenetic inference.

Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru

BMC Bioinform., 2017

Probabilistic estimation of overlap graphs for large sequence datasets.

Rahul Nihalani, Sriram P. Chockalingam, Shaowei Zhu, Vijay V. Vazirani, Srinivas Aluru

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses.

Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

Reverse Engineering Gene Networks: A Comparative Study at Genome-scale.

Sriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

ALFRED: A Practical Method for Alignment-Free Distance Computation.

Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Alberto Apostolico, Srinivas Aluru

J. Comput. Biol., 2016

A parallel algorithm for finding all pairs <i>k</i>-mismatch maximal common substrings.

Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru

Proceedings of the International Conference for High Performance Computing, 2016

An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings.

Sharma V. Thankachan, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2015

A greedy alignment-free distance estimator for phylogenetic inference (extended abstract).

Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru

Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

Efficient detection of viral transmission with threshold-based methods.

Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue

Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

Parallel Read Error Correction for Big Genomic Datasets.

Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the 22nd IEEE International Conference on High Performance Computing, 2015

Information Theory Based Genome-Scale Gene Networks Construction Using MapReduce.

Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru

Proceedings of the 22nd IEEE International Conference on High Performance Computing, 2015

2014

Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks.

Sanchit Misra, Md. Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru

Proceedings of the International Conference for High Performance Computing, 2014

2013

A survey of error-correction methods for next-generation sequencing.

Xiao Yang, Sriram P. Chockalingam, Srinivas Aluru

Briefings Bioinform., 2013

2012

A Parallel Algorithm for Spectrum-based Short Read Error Correction.

Ankit Shah, Sriram P. Chockalingam, Srinivas Aluru

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium, 2012