David S. Campo

Orcid: 0000-0002-8970-3436

According to our database1, David S. Campo authored at least 27 papers between 2008 and 2023.

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Bibliography

2023
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
J. Comput. Biol., April, 2023

2022
Primary case inference in viral outbreaks through analysis of intra-host variant population.
BMC Bioinform., 2022

2020
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
BMC Bioinform., 2020

2018
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
BMC Bioinform., 2018

Automated quality control for a molecular surveillance system.
BMC Bioinform., 2018

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinform., 2018

Predicting Opioid Epidemic by Using Twitter Data.
Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018

2017
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

2015
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform., 2015

Algorithms for prediction of viral transmission using analysis of intra-host viral populations.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

Efficient detection of viral transmission with threshold-based methods.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015

2014
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

New computational methods for assessing the genetic relatedness of close viral variants.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013
Alignment of DNA Mass-Spectral Profiles Using Network Flows.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

Mutational robustness of hepatitis C virus intra-host variants.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response.
Silico Biol., 2012

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.
Silico Biol., 2012

Coordinated evolution of the Hepatitis B Virus Polymerase.
Silico Biol., 2012

Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection.
Silico Biol., 2012

Efficient error correction for next-generation sequencing of viral amplicons.
BMC Bioinform., 2012

2011
Modelling differential interferon resistance of HCV quasispecies.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Network of coordinated substitutions in the Hepatitis B virus polymerase.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2008
HCV Quasispecies Assembly Using Network Flows.
Proceedings of the Bioinformatics Research and Applications, 2008

Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure.
Proceedings of the Bioinformatics Research and Applications, 2008


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