Yuri Khudyakov
According to our database1,
Yuri Khudyakov
authored at least 47 papers
between 2008 and 2024.
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Bibliography
2024
2023
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
J. Comput. Biol., April, 2023
2022
Primary case inference in viral outbreaks through analysis of intra-host variant population.
BMC Bioinform., 2022
SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework.
Proceedings of the Research in Computational Molecular Biology, 2022
2020
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
BMC Bioinform., 2020
2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
2018
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
BMC Bioinform., 2018
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Bioinform., 2018
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning.
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017
Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
2016
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction.
BMC Bioinform., 2016
2015
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform., 2015
Algorithms for prediction of viral transmission using analysis of intra-host viral populations.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
2014
Computational models of liver fibrosis progression for hepatitis C virus chronic infection.
BMC Bioinform., 2014
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
New computational methods for assessing the genetic relatedness of close viral variants.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
2013
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform., 2013
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013
Optimizing pooling strategies for the massive next-generation sequencing of viral samples.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
2012
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response.
Silico Biol., 2012
Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon.
Silico Biol., 2012
Association of antigenic properties to structure of the hepatitis C virus NS3 protein.
Silico Biol., 2012
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.
Silico Biol., 2012
Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection.
Silico Biol., 2012
BMC Bioinform., 2012
2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Host-specific HCV evolution and response to the combined interferon and ribavirin therapy.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
2008
Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein.
Bioinform., 2008
Proceedings of the Bioinformatics Research and Applications, 2008
Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling.
Proceedings of the Bioinformatics Research and Applications, 2008
Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure.
Proceedings of the Bioinformatics Research and Applications, 2008