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Xiao Yang

Orcid: 0009-0003-5157-1487

Affiliations:
  • Broad Institute of Harvard and MIT, GSAP, Cambridge, MA, USA


According to our database1, Xiao Yang authored at least 16 papers between 2007 and 2026.

Collaborative distances:

Timeline

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Links

Online presence:

On csauthors.net:

Bibliography

2026
Tumor cell fraction estimation based on tissue region segmentation and nuclear density.
[BibTeX]
[DOI]
Lulu Qin
,
Xiao Yang
,
Zhigang Pei
,
Susan Fotheringham
,
Xianhong Xu
,
Zexuan Zhu
Expert Syst. Appl., 2026

2025
A Survey of Deep Learning in Histopathological Nuclear Segmentation.
[BibTeX]
[DOI]
Lulu Qin
,
Xiao Yang
,
Xianhong Xu
,
Zexuan Zhu
IEEE Comput. Intell. Mag., August, 2025

2022
Prediction of biomarker-disease associations based on graph attention network and text representation.
[BibTeX]
[DOI]
Minghao Yang
,
Zhi-An Huang
,
Wenhao Gu
,
Kun Han
,
Wenying Pan
,
Xiao Yang
,
Zexuan Zhu
Briefings Bioinform., 2022

2015
Light-weight reference-based compression of FASTQ data.
[BibTeX]
[DOI]
Yongpeng Zhang
,
Linsen Li
,
Yanli Yang
,
Xiao Yang
,
Shan He
,
Zexuan Zhu
BMC Bioinform., 2015

CompMap: a reference-based compression program to speed up read mapping to related reference sequences.
[BibTeX]
[DOI]
Zexuan Zhu
,
Linsen Li
,
Yongpeng Zhang
,
Yanli Yang
,
Xiao Yang
Bioinform., 2015

High-throughput DNA sequence data compression.
[BibTeX]
[DOI]
Zexuan Zhu
,
Yongpeng Zhang
,
Zhen Ji
,
Shan He
,
Xiao Yang
Briefings Bioinform., 2015

2013
Large-Scale metagenomic sequence Clustering on Map-Reduce Clusters.
[BibTeX]
[DOI]
Xiao Yang
,
Jaroslaw Zola
,
Srinivas Aluru
J. Bioinform. Comput. Biol., 2013

A survey of error-correction methods for next-generation sequencing.
[BibTeX]
[DOI]
Xiao Yang
,
Sriram P. Chockalingam
,
Srinivas Aluru
Briefings Bioinform., 2013

2012
An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval.
[BibTeX]
[DOI]
Xiao Yang
,
Florian Sikora
,
Guillaume Blin
,
Sylvie Hamel
,
Romeo Rizzi
,
Srinivas Aluru
Proceedings of the Theory and Applications of Models of Computation, 2012

2011
Repeat-aware modeling and correction of short read errors.
[BibTeX]
[DOI]
Xiao Yang
,
Srinivas Aluru
,
Karin S. Dorman
BMC Bioinform., 2011

Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds.
[BibTeX]
[DOI]
Xiao Yang
,
Jaroslaw Zola
,
Srinivas Aluru
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Workshop: Flexible read decomposition for improved short read error correction.
[BibTeX]
[DOI]
Xiao Yang
,
Karin S. Dorman
,
Srinivas Aluru
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
Reptile: representative tiling for short read error correction.
[BibTeX]
[DOI]
Xiao Yang
,
Karin S. Dorman
,
Srinivas Aluru
Bioinform., 2010

Parallel de novo assembly of large genomes from high-throughput short reads.
[BibTeX]
[DOI]
Benjamin G. Jackson
,
Matthew Regennitter
,
Xiao Yang
,
Patrick S. Schnable
,
Srinivas Aluru
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

An Improved Model for Gene Cluster Inference.
[BibTeX]
Xiao Yang
,
Srinivas Aluru
Proceedings of the ISCA 2nd International Conference on Bioinformatics and Computational Biology, 2010

2007
PARALLEL-TCOFFEE: A parallel multiple sequence aligner.
[BibTeX]
Jaroslaw Zola
,
Xiao Yang
,
Adrian Rospondek
,
Srinivas Aluru
Proceedings of the ISCA 20th International Conference on Parallel and Distributed Computing Systems, 2007


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