Jan Funke

Orcid: 0000-0003-4388-7783

Affiliations:
  • HHMI Janelia Research Campus, Ashburn, VA, USA


According to our database1, Jan Funke authored at least 31 papers between 2009 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Bibliography

2024
DaCapo: a modular deep learning framework for scalable 3D image segmentation.
CoRR, 2024

2023
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images.
CoRR, 2023

Unpaired Image Enhancement for Neurite Segmentation in x-ray Tomography.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2022
Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Discriminative Attribution from Paired Images.
Proceedings of the Computer Vision - ECCV 2022 Workshops, 2022

2021
Discriminative Attribution from Counterfactuals.
CoRR, 2021

How Shift Equivariance Impacts Metric Learning for Instance Segmentation.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021

2020
Instance Separation Emerges from Inpainting.
CoRR, 2020

Microtubule Tracking in Electron Microscopy Volumes.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Inpainting Networks Learn to Separate Cells in Microscopy Images.
Proceedings of the 31st British Machine Vision Conference 2020, 2020

2019
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction.
IEEE Trans. Pattern Anal. Mach. Intell., 2019

2018
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Synaptic Partner Prediction from Point Annotations in Insect Brains.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

The candidate multi-cut for cell segmentation.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

A Benchmark for Epithelial Cell Tracking.
Proceedings of the Computer Vision - ECCV 2018 Workshops, 2018

2017
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs.
CoRR, 2017

The Candidate Multi-Cut for Cell Segmentation.
CoRR, 2017

2016
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Structured learning of assignment models for neuron reconstruction to minimize topological errors.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Tracking of microtubules in anisotropic volumes of neural tissue.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Accurate and Linear Time Pose Estimation from Points and Lines.
Proceedings of the Computer Vision - ECCV 2016, 2016

2015
A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms.
CoRR, 2015

Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Learning to Segment: Training Hierarchical Segmentation under a Topological Loss.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

2014
Automatic Neuron Reconstruction from Anisotropic Electron Microscopy Volumes.
PhD thesis, 2014

Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine.
Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2012
Efficient automatic 3D-reconstruction of branching neurons from EM data.
Proceedings of the 2012 IEEE Conference on Computer Vision and Pattern Recognition, 2012

2011
Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes
CoRR, 2011

2009
A Framework For Evaluating Visual SLAM.
Proceedings of the British Machine Vision Conference, 2009


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