David N. Cooper

According to our database, David N. Cooper authored at least 22 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Inferring the genetic relationship between brain imaging-derived phenotypes and risk of complex diseases by Mendelian randomization and genome-wide colocalization.

Siying Lin, Haoyang Zhang, Mengling Qi, David N. Cooper, Yuedong Yang, Yuanhao Yang, Huiying Zhao

NeuroImage, October, 2023

2021

MutationTaster2021.

Robin Steinhaus, Sebastian Proft, Markus Schuelke, David N. Cooper, Jana Marie Schwarz, Dominik Seelow

Nucleic Acids Res., 2021

2019

Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome.

Kymberleigh A. Pagel, Danny Antaki, Aojie Lian, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac

PLoS Comput. Biol., 2019

RegulationSpotter: annotation and interpretation of extratranscriptic DNA variants.

Jana Marie Schwarz, Daniela Hombach, Sebastian Köhler, David N. Cooper, Markus Schuelke, Dominik Seelow

Nucleic Acids Res., 2019

SeqTailor: a user-friendly webserver for the extraction of DNA or protein sequences from next-generation sequencing data.

Peng Zhang, Bertrand Boisson, Peter D. Stenson, David N. Cooper, Jean-Laurent Casanova, Laurent Abel, Yuval Itan

Nucleic Acids Res., 2019

2018

FATHMM-XF: accurate prediction of pathogenic point mutations via extended features.

Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell

Bioinform., 2018

Mutational signatures and mutable motifs in cancer genomes.

Igor B. Rogozin, Youri I. Pavlov, Alexander Goncearenco, Subhajyoti De, Artem G. Lada, Eugenia Poliakov, Anna R. Panchenko, David N. Cooper

Briefings Bioinform., 2018

2017

An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome.

Michael Ferlaino, Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell

BMC Bioinform., 2017

When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants.

Kymberleigh A. Pagel, Vikas Pejaver, Guan Ning Lin, Hyun-Jun Nam, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac

Bioinform., 2017

2016

The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease.

Jose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac

PLoS Comput. Biol., 2016

Mining clinical attributes of genomic variants through assisted literature curation in Egas.

Sérgio Matos, David Campos, Renato P. Pinho, Raquel M. Silva, Matthew E. Mort, David N. Cooper, José Luís Oliveira

Database J. Biol. Databases Curation, 2016

2015

An integrative approach to predicting the functional effects of non-coding and coding sequence variation.

Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell

Bioinform., 2015

DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels.

Lukas Folkman, Yuedong Yang, Zhixiu Li, Bela Stantic, Abdul Sattar, Matthew E. Mort, David N. Cooper, Yunlong Liu, Yaoqi Zhou

Bioinform., 2015

Sequential data selection for predicting the pathogenic effects of sequence variation.

Mark F. Rogers, Colin Campbell, Hashem A. Shihab, Tom R. Gaunt, Matthew E. Mort, David N. Cooper

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing.

Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper, Biao Li, Sean D. Mooney, Rachel Karchin

PLoS Comput. Biol., 2014

2013

Predicting the functional consequences of cancer-associated amino acid substitutions.

Hashem A. Shihab, Julian Gough, David N. Cooper, Ian N. M. Day, Tom R. Gaunt

Bioinform., 2013

CRAVAT: cancer-related analysis of variants toolkit.

Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin

Bioinform., 2013

2012

regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions.

Mingxiang Teng, Shoji Ichikawa, Leah R. Padgett, Yadong Wang, Matthew E. Mort, David N. Cooper, Daniel L. Koller, Tatiana Foroud, Howard J. Edenberg, Michael J. Econs, Yunlong Liu

Bioinform., 2012

2010

Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.

Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac

BMC Bioinform., 2010

2009

Automated inference of molecular mechanisms of disease from amino acid substitutions.

Biao Li, Vidhya G. Krishnan, Matthew E. Mort, Fuxiao Xin, Kishore K. Kamati, David N. Cooper, Sean D. Mooney, Predrag Radivojac

Bioinform., 2009

2006

In Silico Discrimination of Single Nucleotide Polymorphisms and Pathological Mutations in Human Gene Promoter Regions by Means of Local DNA Sequence Context and Regularity.

Imtiaz A. Khan, Matthew E. Mort, Paul R. Buckland, Michael C. O'Donovan, David N. Cooper, Nadia A. Chuzhanova

Silico Biol., 2006

1998

The human gene mutation database.

David N. Cooper, Edward V. Ball, Michael Krawczak

Nucleic Acids Res., 1998