Berthold Göttgens

According to our database, Berthold Göttgens authored at least 16 papers between 2003 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets.

M. S. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M. L. Emmett, Fatin N. Zainul Abidin, Nisar Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A.-Ling, Berthold Göttgens, Georges Lacaud, Valerie Kouskoff, Constanze Bonifer, David R. Westhead

PLoS Comput. Biol., 2019

Decoding human fetal liver haematopoiesis.

Dorin-Mirel Popescu, Rachel A. Botting, Emily Stephenson, Kile Green, Simone Webb, Laura Jardine, Emily F. Calderbank, Krzysztof Polanski, Issac Goh, Mirjana Efremova, Meghan Acres, Daniel Maunder, Peter Vegh, Yorick Gitton, Jong-Eun Park, Roser Vento-Tormo, Zhichao Miao, David Dixon, Rachel Rowell, David McDonald, James Fletcher, Elizabeth Poyner, Gary Reynolds, Michael Mather, Corina Moldovan, Lira Mamanova, Frankie Greig, Matthew D. Young, Kerstin B. Meyer, Steven Lisgo, Jaume Bacardit, Andrew Fuller, Ben Millar, Barbara Innes, Susan Lindsay, Michael J. T. Stubbington, Monika S. Kowalczyk, Bo Li, Orr Ashenberg, Marcin Tabaka, Danielle Dionne, Timothy L. Tickle, Michal Slyper, Orit Rozenblatt-Rosen, Andrew Filby, Peter Carey, Alexandra-Chloé Villani, Anindita Roy, Aviv Regev, Alain Chédotal, Irene Roberts, Berthold Göttgens, Sam Behjati, Elisa Laurenti, Sarah A. Teichmann, Muzlifah Haniffa

Nat., 2019

A single-cell molecular map of mouse gastrulation and early organogenesis.

Blanca Pijuan-Sala, Jonathan A. Griffiths, Carolina Guibentif, Tom W. Hiscock, Wajid Jawaid, Fernando J. Calero-Nieto, Carla Mulas, Ximena Ibarra-Soria, Richard C. V. Tyser, Debbie Lee Lian Ho, Wolf Reik, Shankar Srinivas, Benjamin D. Simons, Jennifer Nichols, John C. Marioni, Berthold Göttgens

Nat., 2019

2018

SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data.

Steven Woodhouse, Nir Piterman, Christoph M. Wintersteiger, Berthold Göttgens, Jasmin Fisher

BMC Syst. Biol., 2018

A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.

Felicia S. L. Ng, David Ruau, Lorenz Wernisch, Berthold Göttgens

Briefings Bioinform., 2018

2016

Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data.

Daphne Ezer, Victoria Moignard, Berthold Göttgens, Boris Adryan

PLoS Comput. Biol., 2016

BTR: training asynchronous Boolean models using single-cell expression data.

Chee Yee Lim, Huange Wang, Steven Woodhouse, Nir Piterman, Lorenz Wernisch, Jasmin Fisher, Berthold Göttgens

BMC Bioinform., 2016

2015

CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.

Manuel Sánchez-Castillo, David Ruau, Adam C. Wilkinson, Felicia S. L. Ng, Rebecca Hannah, Evangelia Diamanti, Patrick Lombard, Nicola K. Wilson, Berthold Göttgens

Nucleic Acids Res., 2015

2014

TRES predicts transcription control in embryonic stem cells.

Christopher Pooley, David Ruau, Patrick Lombard, Berthold Göttgens, Anagha Joshi

Bioinform., 2014

Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data.

Florian Buettner, Victoria Moignard, Berthold Göttgens, Fabian J. Theis

Bioinform., 2014

2013

Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.

Nicola Bonzanni, Abhishek Garg, K. Anton Feenstra, Judith Schütte, Sarah Kinston, Diego Miranda-Saavedra, Jaap Heringa, Ioannis Xenarios, Berthold Göttgens

Bioinform., 2013

2010

Modeling Reveals Bistability and Low-Pass Filtering in the Network Module Determining Blood Stem Cell Fate.

Jatin Narula, Aileen M. Smith, Berthold Göttgens, Oleg A. Igoshin

PLoS Comput. Biol., 2010

2009

BloodExpress: a database of gene expression in mouse haematopoiesis.

Diego Miranda-Saavedra, Subhajyoti De, Matthew W. B. Trotter, Sarah A. Teichmann, Berthold Göttgens

Nucleic Acids Res., 2009

2006

TFBScluster web server for the identification of mammalian composite regulatory elements.

Ian John Donaldson, Berthold Göttgens

Nucleic Acids Res., 2006

2005

TFBScluster: a resource for the characterization of transcriptional regulatory networks.

Ian John Donaldson, Michael Chapman, Berthold Göttgens

Bioinform., 2005

2003

Fast and sensitive multiple alignment of large genomic sequences.

Michael Brudno, Michael Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern

BMC Bioinform., 2003