Takaharu Mori

According to our database, Takaharu Mori authored at least 8 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

SPANA: Spatial decomposition analysis for cellular-scale molecular dynamics simulations.

Isseki Yu, Takaharu Mori, Daisuke Matsuoka, Donatas Surblys, Yuji Sugita

J. Comput. Chem., March, 2024

2021

Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeling from Cryo-EM Density Maps.

Takaharu Mori, Genki Terashi, Daisuke Matsuoka, Daisuke Kihara, Yuji Sugita

J. Chem. Inf. Model., 2021

2017

Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations.

Osamu Miyashita, Chigusa Kobayashi, Takaharu Mori, Yuji Sugita, Florence Tama

J. Comput. Chem., 2017

GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms.

Chigusa Kobayashi, Jaewoon Jung, Yasuhiro Matsunaga, Takaharu Mori, Tadashi Ando, Koichi Tamura, Motoshi Kamiya, Yuji Sugita

J. Comput. Chem., 2017

2014

Midpoint cell method for hybrid (MPI+OpenMP) parallelization of molecular dynamics simulations.

Jaewoon Jung, Takaharu Mori, Yuji Sugita

J. Comput. Chem., 2014

2013

Efficient lookup table using a linear function of inverse distance squared.

Jaewoon Jung, Takaharu Mori, Yuji Sugita

J. Comput. Chem., 2013

2012

Analysis of lipid surface area in protein-membrane systems combining voronoi tessellation and monte carlo integration methods.

Takaharu Mori, Fumiko Ogushi, Yuji Sugita

J. Comput. Chem., 2012

2010

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.

Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi

BMC Bioinform., 2010