Shandar Ahmad

According to our database1, Shandar Ahmad authored at least 28 papers between 2002 and 2019.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:



Protein-DNA Interactions.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Computational Prediction of Nucleic Acid Binding Residues From Sequence.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images.
Frontiers Neuroinformatics, 2019

ECG anomaly class identification using LSTM and error profile modeling.
Comput. Biol. Medicine, 2019

Improved pose and affinity predictions using different protocols tailored on the basis of data availability.
J. Comput. Aided Mol. Des., 2016

Prediction of dinucleotide-specific RNA-binding sites in proteins.
BMC Bioinform., 2011

Pattern Recognition in Bioinformatics.
Pattern Recognit. Lett., 2010

CCRXP: exploring clusters of conserved residues in protein structures.
Nucleic Acids Res., 2010

Proteochemometric Recognition of Stable Kinase Inhibition Complexes Using Topological Autocorrelation and Support Vector Machines.
J. Chem. Inf. Model., 2010

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.
BMC Bioinform., 2010

PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools.
Adv. Bioinformatics, 2010

Recognition of Drug-Target Interaction Patterns using Genetic Algorithm-optimized Bayesian-regularized Neural Networks and Support Vector Machines.
Proceedings of the IEEE International Conference on Systems, 2009

Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products.
Proceedings of the Bioinformatics Research and Applications, 2008

Neural network based prediction of protein structure and Function: Comparison with other machine learning methods.
Proceedings of the International Joint Conference on Neural Networks, 2008

ATP-binding site as a further application of neural networks to residue level prediction.
Proceedings of the International Joint Conference on Neural Networks, 2008

Dynamic Outlier Exclusion Training Algorithm for Sequence Based Predictions in Proteins Using Neural Network.
Proceedings of the Pattern Recognition in Bioinformatics, 2007

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition.
Nucleic Acids Res., 2006

Dimensionality of amino acid space and solvent accessibility prediction with neural networks.
Comput. Biol. Chem., 2006

TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins.
Nucleic Acids Res., 2005

Application of residue distribution along the sequence for discriminating outer membrane proteins.
Comput. Biol. Chem., 2005

PSSM-based prediction of DNA binding sites in proteins.
BMC Bioinform., 2005

Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins.
Nucleic Acids Res., 2004

Neural network-based prediction of transmembrane -strand segments in outer membrane proteins.
J. Comput. Chem., 2004

<i>ASAView</i>: Database and tool for solvent accessibility representation in proteins.
BMC Bioinform., 2004

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
Bioinform., 2004

Design and training of a neural network for predicting the solvent accessibility of proteins.
J. Comput. Chem., 2003

RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
Bioinform., 2003

NETASA: neural network based prediction of solvent accessibility.
Bioinform., 2002