Daisuke Kihara

According to our database1, Daisuke Kihara authored at least 41 papers between 2006 and 2019.

Collaborative distances:



In proceedings 
PhD thesis 


On csauthors.net:


Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences.
Bioinformatics, 2019

IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Modeling the assembly order of multimeric heteroprotein complexes.
PLoS Computational Biology, 2018

Modeling disordered protein interactions from biophysical principles.
PLoS Computational Biology, 2017

A Study of the Boltzmann Sequence-Structure Channel.
Proceedings of the IEEE, 2017

NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology.
BMC Bioinformatics, 2017

DextMP: deep dive into text for predicting moonlighting proteins.
Bioinformatics, 2017

Protein Shape Retrieval.
Proceedings of the Eurographics Workshop on 3D Object Retrieval, 2017

Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014.
Journal of Chemical Information and Modeling, 2016

PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation.
Journal of Chemical Information and Modeling, 2016

Ranking protein-protein docking results using steered molecular dynamics and potential of mean force calculations.
Journal of Computational Chemistry, 2016

Genome-scale prediction of moonlighting proteins using diverse protein association information.
Bioinformatics, 2016

Ensemble-based evaluation for protein structure models.
Bioinformatics, 2016

The Boltzmann sequence-structure channel.
Proceedings of the IEEE International Symposium on Information Theory, 2016

GenoBase: comprehensive resource database of Escherichia coli K-12.
Nucleic Acids Research, 2015

Navigating 3D electron microscopy maps with EM-SURFER.
BMC Bioinformatics, 2015

Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0.
Bioinformatics, 2015

PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool.
Bioinformatics, 2015

Phase transitions in a sequence-structure channel.
Proceedings of the 2015 Information Theory and Applications Workshop, 2015

Comparison of Image Patches Using Local Moment Invariants.
IEEE Trans. Image Processing, 2014

The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio.
Bioinformatics, 2014

In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment.
BMC Bioinformatics, 2013

Evaluation of Arterial Stiffness during the Flow-Mediated Dilation Test.
Proceedings of the IEEE International Conference on Systems, 2013

Effective inter-residue contact definitions for accurate protein fold recognition.
BMC Bioinformatics, 2012

Constructing patch-based ligand-binding pocket database for predicting function of proteins.
BMC Bioinformatics, 2012

Protein docking prediction using predicted protein-protein interface.
BMC Bioinformatics, 2012

Evaluation of multiple protein docking structures using correctly predicted pairwise subunits.
BMC Bioinformatics, 2012

Protein domain recurrence and order can enhance prediction of protein functions.
Bioinformatics, 2012

Quantification of Protein Group Coherence and Pathway Assignment Using Functional Association.
BMC Bioinformatics, 2011

Characterization and Classification of Local Protein Surfaces Using Self-Organizing Map.
IJKDB, 2010

Improved protein surface comparison and application to low-resolution protein structure data.
BMC Bioinformatics, 2010

Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP.
BMC Bioinformatics, 2010

Application of 3D Zernike descriptors to shape-based ligand similarity searching.
J. Cheminformatics, 2009

Protein-protein docking using region-based 3D Zernike descriptors.
BMC Bioinformatics, 2009

3D-SURFER: software for high-throughput protein surface comparison and analysis.
Bioinformatics, 2009

ESG: extended similarity group method for automated protein function prediction.
Bioinformatics, 2009

Combining gene sequence similarity and textual information for gene function annotation in the literature.
Inf. Retr., 2008

Function Prediction of uncharacterized proteins.
J. Bioinformatics and Computational Biology, 2007

Salient critical points for meshes.
Proceedings of the 2007 ACM Symposium on Solid and Physical Modeling, 2007

Tracing Lineage in Multi-version Scientific Databases.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
BMC Bioinformatics, 2006