Daisuke Kihara
According to our database1,
Daisuke Kihara
authored at least 41 papers
between 2006 and 2019.
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Bibliography
2019
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences.
Bioinformatics, 2019
2018
IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018
Modeling the assembly order of multimeric heteroprotein complexes.
PLoS Computational Biology, 2018
2017
Modeling disordered protein interactions from biophysical principles.
PLoS Computational Biology, 2017
A Study of the Boltzmann Sequence-Structure Channel.
Proceedings of the IEEE, 2017
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology.
BMC Bioinformatics, 2017
DextMP: deep dive into text for predicting moonlighting proteins.
Bioinformatics, 2017
Protein Shape Retrieval.
Proceedings of the Eurographics Workshop on 3D Object Retrieval, 2017
2016
Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014.
Journal of Chemical Information and Modeling, 2016
PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation.
Journal of Chemical Information and Modeling, 2016
Ranking protein-protein docking results using steered molecular dynamics and potential of mean force calculations.
Journal of Computational Chemistry, 2016
Genome-scale prediction of moonlighting proteins using diverse protein association information.
Bioinformatics, 2016
Ensemble-based evaluation for protein structure models.
Bioinformatics, 2016
The Boltzmann sequence-structure channel.
Proceedings of the IEEE International Symposium on Information Theory, 2016
2015
GenoBase: comprehensive resource database of Escherichia coli K-12.
Nucleic Acids Research, 2015
Navigating 3D electron microscopy maps with EM-SURFER.
BMC Bioinformatics, 2015
Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0.
Bioinformatics, 2015
PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool.
Bioinformatics, 2015
Phase transitions in a sequence-structure channel.
Proceedings of the 2015 Information Theory and Applications Workshop, 2015
2014
Comparison of Image Patches Using Local Moment Invariants.
IEEE Trans. Image Processing, 2014
The International Society of Computational Biology presents: the Great Lakes Bioinformatics Conference, May 16-18, 2014, Cincinnati, Ohio.
Bioinformatics, 2014
2013
In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment.
BMC Bioinformatics, 2013
Evaluation of Arterial Stiffness during the Flow-Mediated Dilation Test.
Proceedings of the IEEE International Conference on Systems, 2013
2012
Effective inter-residue contact definitions for accurate protein fold recognition.
BMC Bioinformatics, 2012
Constructing patch-based ligand-binding pocket database for predicting function of proteins.
BMC Bioinformatics, 2012
Protein docking prediction using predicted protein-protein interface.
BMC Bioinformatics, 2012
Evaluation of multiple protein docking structures using correctly predicted pairwise subunits.
BMC Bioinformatics, 2012
Protein domain recurrence and order can enhance prediction of protein functions.
Bioinformatics, 2012
2011
Quantification of Protein Group Coherence and Pathway Assignment Using Functional Association.
BMC Bioinformatics, 2011
2010
Characterization and Classification of Local Protein Surfaces Using Self-Organizing Map.
IJKDB, 2010
Improved protein surface comparison and application to low-resolution protein structure data.
BMC Bioinformatics, 2010
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP.
BMC Bioinformatics, 2010
2009
Application of 3D Zernike descriptors to shape-based ligand similarity searching.
J. Cheminformatics, 2009
Protein-protein docking using region-based 3D Zernike descriptors.
BMC Bioinformatics, 2009
3D-SURFER: software for high-throughput protein surface comparison and analysis.
Bioinformatics, 2009
ESG: extended similarity group method for automated protein function prediction.
Bioinformatics, 2009
2008
Combining gene sequence similarity and textual information for gene function annotation in the literature.
Inf. Retr., 2008
2007
Function Prediction of uncharacterized proteins.
J. Bioinformatics and Computational Biology, 2007
Salient critical points for meshes.
Proceedings of the 2007 ACM Symposium on Solid and Physical Modeling, 2007
Tracing Lineage in Multi-version Scientific Databases.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
BMC Bioinformatics, 2006