Vec2image: an explainable artificial intelligence model for the feature representation and classification of high-dimensional biological data by vector-to-image conversion.

[BibT_eX]

[DOI]

Hui Tang

Xiangtian Yu

Rui Liu

Tao Zeng

Briefings Bioinform., 2022

2021

Performance assessment of sample-specific network control methods for bulk and single-cell biological data analysis.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2021

2020

Efficient Mining Multi-Mers in a Variety of Biological Sequences.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis.

[BibT_eX]

[DOI]

Genom. Proteom. Bioinform., 2020

Network control principles for identifying personalized driver genes in cancer.

[BibT_eX]

[DOI]

Briefings Bioinform., 2020

Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study.

[BibT_eX]

[DOI]

IEEE Access, 2020

Identifying Essential Methylation Patterns and Genes Associated With Stroke.

[BibT_eX]

[DOI]

IEEE Access, 2020

Disease Cluster Detection and Functional Characterization.

[BibT_eX]

[DOI]

IEEE Access, 2020

Efficient Mining Closed k-Mers from DNA and Protein Sequences.

[BibT_eX]

[DOI]

Proceedings of the 2020 IEEE International Conference on Big Data and Smart Computing, 2020

2019

A novel network control model for identifying personalized driver genes in cancer.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Dynamically characterizing individual clinical change by the steady state of disease-associated pathway.

[BibT_eX]

[DOI]

BMC Bioinform., 2019

Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells.

[BibT_eX]

[DOI]

IEEE Access, 2019

2018

Discovering personalized driver mutation profiles of single samples in cancer by network control strategy.

[BibT_eX]

[DOI]

Bioinform., 2018

Characterizing and Discriminating Individual Steady State of Disease-Associated Pathway.

[BibT_eX]

[DOI]

Proceedings of the Intelligent Computing Theories and Application, 2018

2017

Differential function analysis: identifying structure and activation variations in dysregulated pathways.

[BibT_eX]

[DOI]

Sci. China Inf. Sci., 2017

Comparative network stratification analysis for identifying functional interpretable network biomarkers.

[BibT_eX]

[DOI]

BMC Bioinform., 2017

Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data.

[BibT_eX]

[DOI]

Bioinform., 2017

Mining K-mers of Various Lengths in Biological Sequences.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

2016

Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals.

[BibT_eX]

[DOI]

Briefings Bioinform., 2016

Integration of multiple heterogeneous omics data.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model.

[BibT_eX]

[DOI]

Hao Kang

Kwang-Hyun Cho

Xiaohua Douglas Zhang

Tao Zeng

Luonan Chen

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Identification of phenotypic networks based on whole transcriptome by comparative network decomposition.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Negative correlation based gene markers identification in integrative gene expression data.

[BibT_eX]

[DOI]

Tao Zeng

Xuan Guo

Juan Liu

Int. J. Data Min. Bioinform., 2014

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis.

[BibT_eX]

[DOI]

Briefings Bioinform., 2014

Detecting Phosphorylation Determined Active Protein Interaction Network during Cancer Development by Robust Network Component Analysis.

[BibT_eX]

[DOI]

Tao Zeng

Ziming Wang

Luonan Chen

Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

MMSE: A generalized coherence measure for identifying linear patterns.

[BibT_eX]

[DOI]

Shuhua Chen

Juan Liu

Tao Zeng

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2012

Correction: Tracing dynamic biological processes during phase transition.

[BibT_eX]

[DOI]

Tao Zeng

Luonan Chen

BMC Syst. Biol., 2012

Tracing dynamic biological processes during phase transition.

[BibT_eX]

[DOI]

Tao Zeng

Luonan Chen

BMC Syst. Biol., 2012

Module network rewiring in response to therapy.

[BibT_eX]

[DOI]

Tao Zeng

Ruozhao Wang

Luonan Chen

Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011

Prediction of Heme Binding Sites in Heme Proteins Using an Integrative Sequence Profile Coupling Evolutionary Information with Physicochemical Properties.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

Mixture classification model based on clinical markers for breast cancer prognosis.

[BibT_eX]

[DOI]

Tao Zeng