Luonan Chen
Orcid: 0000-0002-3960-0068
According to our database1,
Luonan Chen
authored at least 187 papers
between 1995 and 2023.
Collaborative distances:
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Bibliography
2023
Contrastively generative self-expression model for single-cell and spatial multimodal data.
Briefings Bioinform., September, 2023
Briefings Bioinform., September, 2023
Why Increase of Heterogeneity Signals Pre-Deterioration During Tumor Progression: A Unified Mathematical Model.
SIAM J. Appl. Math., April, 2023
Inf. Sci., April, 2023
Cell-type annotation with accurate unseen cell-type identification using multiple references.
PLoS Comput. Biol., 2023
2022
Entropy, November, 2022
Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI Image for Alzheimer's Disease Classification.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Predicting high-dimensional time series data with spatial, temporal and global information.
Inf. Sci., 2022
Time Series Prediction by Multi-task GPR with Spatiotemporal Information Transformation.
CoRR, 2022
Detection of Alzheimer's disease using features of brain region-of-interest-based individual network constructed with the sMRI image.
Comput. Medical Imaging Graph., 2022
BMC Bioinform., 2022
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
J. Biomed. Semant., 2022
Deep latent space fusion for adaptive representation of heterogeneous multi-omics data.
Briefings Bioinform., 2022
Briefings Bioinform., 2022
Detecting the critical states during disease development based on temporal network flow entropy.
Briefings Bioinform., 2022
2021
Deep cross-omics cycle attention model for joint analysis of single-cell multi-omics data.
Bioinform., November, 2021
Alzheimer's disease classification using features extracted from nonsubsampled contourlet subband-based individual networks.
Neurocomputing, 2021
c-CSN: Single-cell RNA Sequencing Data Analysis by Conditional Cell-specific Network.
Genom. Proteom. Bioinform., 2021
Advanced Single-cell Omics Technologies and Informatics Tools for Genomics, Proteomics, and Bioinformatics Analysis.
Genom. Proteom. Bioinform., 2021
Spatiotemporal convolutional network for time-series prediction and causal inference.
CoRR, 2021
Revealing dynamic regulations and the related key proteins of myeloma-initiating cells by integrating experimental data into a systems biological model.
Bioinform., 2021
Deep-joint-learning analysis model of single cell transcriptome and open chromatin accessibility data.
Briefings Bioinform., 2021
Briefings Bioinform., 2021
2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor.
Quant. Biol., 2020
PLoS Comput. Biol., 2020
Kinase-substrate Edge Biomarkers Provide A More Accurate Prognostic Prediction in ER-negative Breast Cancer.
Genom. Proteom. Bioinform., 2020
Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis.
Genom. Proteom. Bioinform., 2020
Single-sample landscape entropy reveals the imminent phase transition during disease progression.
Bioinform., 2020
Corrigendum to: Single-sample landscape entropy reveals the imminent phase transition during disease progression.
Bioinform., 2020
Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures.
Briefings Bioinform., 2020
Briefings Bioinform., 2020
Identification of Alzheimer's disease based on wavelet transformation energy feature of the structural MRI image and NN classifier.
Artif. Intell. Medicine, 2020
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020
Proceedings of the 2020 IEEE International Conference on Big Data and Smart Computing, 2020
Network biomarker for quantifying regular state of a biological system, and dynamic network biomarker for quantifying critical state of a biological system.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
A Semisupervised Classification Approach for Multidomain Networks With Domain Selection.
IEEE Trans. Neural Networks Learn. Syst., 2019
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs.
PLoS Comput. Biol., 2019
Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process.
PLoS Comput. Biol., 2019
PLoS Comput. Biol., 2019
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
Nucleic Acids Res., 2019
2018
BMC Syst. Biol., 2018
BMC Syst. Biol., 2018
Single cell clustering based on cell-pair differentiability correlation and variance analysis.
Bioinform., 2018
Discovering personalized driver mutation profiles of single samples in cancer by network control strategy.
Bioinform., 2018
2017
Quantifying critical states of complex diseases using single-sample dynamic network biomarkers.
PLoS Comput. Biol., 2017
Differential function analysis: identifying structure and activation variations in dysregulated pathways.
Sci. China Inf. Sci., 2017
Detecting causality from short time-series data based on prediction of topologically equivalent attractors.
BMC Syst. Biol., 2017
Comparative network stratification analysis for identifying functional interpretable network biomarkers.
BMC Bioinform., 2017
Bioinform., 2017
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
2016
PLoS Comput. Biol., 2016
CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.
BMC Bioinform., 2016
Detecting critical state before phase transition of complex biological systems by hidden Markov model.
Bioinform., 2016
Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals.
Briefings Bioinform., 2016
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Int. J. Bifurc. Chaos, 2015
Identifying overlapping communities in social networks using multi-scale local information expansion.
CoRR, 2015
Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity.
BMC Bioinform., 2015
Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia.
BMC Bioinform., 2015
Identification of phenotypic networks based on whole transcriptome by comparative network decomposition.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
PLoS Comput. Biol., 2014
Int. J. Bifurc. Chaos, 2014
Bioinform., 2014
Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis.
Briefings Bioinform., 2014
Detecting Phosphorylation Determined Active Protein Interaction Network during Cancer Development by Robust Network Component Analysis.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014
2013
Dynamical network biomarkers for identifying critical transitions and their driving networks of biologic processes.
Quant. Biol., 2013
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer.
J. Am. Medical Informatics Assoc., 2013
Investigation of anti-cancer mechanisms by comparative analysis of naked mole rat and rat.
BMC Syst. Biol., 2013
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.
Bioinform., 2013
Database J. Biol. Databases Curation, 2013
Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
J. Am. Medical Informatics Assoc., 2012
BMC Syst. Biol., 2012
BMC Syst. Biol., 2012
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Syst. Biol., 2012
Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug.
BMC Syst. Biol., 2012
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
BMC Bioinform., 2012
BMC Bioinform., 2012
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
Bioinform., 2012
Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
A fixed-point blind source extraction algorithm and its application to ECG data analysis.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
in silico identification of novel cancer-related genes by comparative genomics of naked mole rat and rat.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Comparative analysis of protein-coding genes and long non-coding RNAs of prostate cancer between Caucasian and Chinese populations.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012
Clustering-based ℌ2-state aggregation of positive networks and its application to reduction of chemical master equations.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012
Reconstructing dynamic gene regulatory network for the development process of hepatocellular carcinoma.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
Dynamical modeling of chronic myeloid leukemia progression and the development of mutations.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
2011
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Syst. Biol., 2011
Computational systems biology: integration of sequence, structure, network, and dynamics.
BMC Syst. Biol., 2011
Neural fate decisions mediated by <i>trans</i>-activation and <i>cis</i>-inhibition in Notch signaling.
Bioinform., 2011
Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis.
Proceedings of the Bio-Inspired Computing and Applications, 2011
2010
J. Syst. Sci. Complex., 2010
J. Syst. Sci. Complex., 2010
BMC Syst. Biol., 2010
FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures.
BMC Syst. Biol., 2010
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Syst. Biol., 2010
Detecting disease associated modules and prioritizing active genes based on high throughput data.
BMC Bioinform., 2010
Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinform., 2010
Inferring gene regulatory networks from expression data with prior knowledge by linear programming.
Proceedings of the International Conference on Machine Learning and Cybernetics, 2010
Proceedings of the Proteome Bioinformatics, 2010
2009
Proceedings of the Fuzzy Systems in Bioinformatics and Computational Biology, 2009
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
PLoS Comput. Biol., 2009
Math. Comput. Simul., 2009
J. Bioinform. Comput. Biol., 2009
Neurocomputing, 2009
Modeling post-transcriptional regulation activity of small non-coding RNAs in <i>Escherichia coli</i>.
BMC Bioinform., 2009
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease.
Proceedings of the IEEE International Conference on Systems, 2009
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009
Proceedings of the Complex Sciences, 2009
Proceedings of the 48th IEEE Conference on Decision and Control, 2009
A New Balanced Ensemble Classifier for Predicting Fungi Protein Subcellular Localization Based on Protein Primary Structures.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009
2008
Proc. IEEE, 2008
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.
Neurocomputing, 2008
Protein function prediction with the shortest path in functional linkage graph and boosting.
Int. J. Bioinform. Res. Appl., 2008
Int. J. Bioinform. Res. Appl., 2008
BMC Syst. Biol., 2008
Proceedings of the Pattern Recognition in Bioinformatics, 2008
A Novel Classifier Based on Enhanced Lipschitz Embedding for Speech Emotion Recognition.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2008
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2007
IEEE Trans. Circuits Syst. II Express Briefs, 2007
A Systems Biology Perspective on Signal Processing in Genetic Network Motifs [Life Sciences].
IEEE Signal Process. Mag., 2007
Int. J. Bioinform. Res. Appl., 2007
BMC Bioinform., 2007
BMC Bioinform., 2007
Bioinform., 2007
Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007
Proceedings of the Life System Modeling and Simulation, International Conference, 2007
Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2007
Double Three-Level Inverter Based Variable Frequency Drive with Minimal Total Harmonic Distortion Using Particle Swarm Optimization.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2007
2006
Stability of Genetic Networks With SUM Regulatory Logic: Lur'e System and LMI Approach.
IEEE Trans. Circuits Syst. I Regul. Pap., 2006
IEEE Trans. Circuits Syst. I Regul. Pap., 2006
PLoS Comput. Biol., 2006
Bioinform., 2006
Synchronizing a multicellular system by external input: an artificial control strategy.
Bioinform., 2006
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.
Proceedings of the Theory and Applications of Models of Computation, 2006
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2006), 2006
Proceedings of the Neural Information Processing, 13th International Conference, 2006
Proceedings of the Computational Intelligence and Bioinformatics, 2006
Design and Implementation of Probability-Based Scoring Function for Peptide Mass Fingerprinting Protein Identification.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2005
J. Bioinform. Comput. Biol., 2005
J. Bioinform. Comput. Biol., 2005
Proceedings of the Advances in Neural Networks - ISNN 2005, Second International Symposium on Neural Networks, Chongqing, China, May 30, 2005
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2005), 2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
2003
IEEE Trans. Autom. Control., 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
2002
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002
1998
Proceedings of the IEEE International Conference on Systems, Man and Cybernetics, 1998
1995
Neural Networks, 1995
Proceedings of International Conference on Neural Networks (ICNN'95), Perth, WA, Australia, November 27, 1995