Luonan Chen

According to our database1, Luonan Chen
  • authored at least 128 papers between 1995 and 2017.
  • has a "Dijkstra number"2 of four.

Timeline

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Bibliography

2017
Differential function analysis: identifying structure and activation variations in dysregulated pathways.
SCIENCE CHINA Information Sciences, 2017

Understanding biological systems through the lens of data.
BMC Systems Biology, 2017

Comparative network stratification analysis for identifying functional interpretable network biomarkers.
BMC Bioinformatics, 2017

Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data.
Bioinformatics, 2017

Mining K-mers of Various Lengths in Biological Sequences.
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

2016
CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.
BMC Bioinformatics, 2016

Detecting critical state before phase transition of complex biological systems by hidden Markov model.
Bioinformatics, 2016

Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals.
Briefings in Bioinformatics, 2016

Integration of multiple heterogeneous omics data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Guest Editorial for Special Section on ISB/TBC 2014.
IEEE/ACM Trans. Comput. Biology Bioinform., 2015

Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model.
IEEE/ACM Trans. Comput. Biology Bioinform., 2015

Dynamics of an HBV Model with Drug Resistance Under Intermittent Antiviral Therapy.
I. J. Bifurcation and Chaos, 2015

Identifying overlapping communities in social networks using multi-scale local information expansion.
CoRR, 2015

Measuring robustness of community structure in complex networks.
CoRR, 2015

Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity.
BMC Bioinformatics, 2015

Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia.
BMC Bioinformatics, 2015

Identifying cancer-related microRNAs based on gene expression data.
Bioinformatics, 2015

Clustered model reduction of positive directed networks.
Automatica, 2015

Identification of phenotypic networks based on whole transcriptome by comparative network decomposition.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis.
PLoS Computational Biology, 2014

Predicting Time Series from Short-Term High-Dimensional Data.
I. J. Bifurcation and Chaos, 2014

Big Biological Data: Challenges and Opportunities.
Genomics, Proteomics & Bioinformatics, 2014

Prediction and early diagnosis of complex diseases by edge-network.
Bioinformatics, 2014

Identifying critical transitions of complex diseases based on a single sample.
Bioinformatics, 2014

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis.
Briefings in Bioinformatics, 2014

Detecting Phosphorylation Determined Active Protein Interaction Network during Cancer Development by Robust Network Component Analysis.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014

2013
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer.
JAMIA, 2013

Investigation of anti-cancer mechanisms by comparative analysis of naked mole rat and rat.
BMC Systems Biology, 2013

Computational systems biology in the big data era.
BMC Systems Biology, 2013

NOA: a cytoscape plugin for network ontology analysis.
Bioinformatics, 2013

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.
Bioinformatics, 2013

eFG: an electronic resource for Fusarium graminearum.
Database, 2013

Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013

2012
Guest Editorial: Bioinformatics and Computational Systems Biology.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Identifying disease genes and module biomarkers by differential interactions.
JAMIA, 2012

Correction: Tracing dynamic biological processes during phase transition.
BMC Systems Biology, 2012

Tracing dynamic biological processes during phase transition.
BMC Systems Biology, 2012

Modelling biological systems from molecules to dynamical networks.
BMC Systems Biology, 2012

A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC Systems Biology, 2012

Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug.
BMC Systems Biology, 2012

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
BMC Bioinformatics, 2012

Identifying dysregulated pathways in cancers from pathway interaction networks.
BMC Bioinformatics, 2012

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
Bioinformatics, 2012

Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

A fixed-point blind source extraction algorithm and its application to ECG data analysis.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

Module network rewiring in response to therapy.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

in silico identification of novel cancer-related genes by comparative genomics of naked mole rat and rat.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

A new method to identify repositioned drugs for prostate cancer.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

Construction and analysis of genome-wide SNP networks.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

Comparative analysis of protein-coding genes and long non-coding RNAs of prostate cancer between Caucasian and Chinese populations.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

Clustering-based ℌ2-state aggregation of positive networks and its application to reduction of chemical master equations.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Reconstructing dynamic gene regulatory network for the development process of hepatocellular carcinoma.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Dynamical modeling of chronic myeloid leukemia progression and the development of mutations.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC Systems Biology, 2011

Computational systems biology: integration of sequence, structure, network, and dynamics.
BMC Systems Biology, 2011

Multi-equilibrium property of metabolic networks: SSI module.
BMC Systems Biology, 2011

Neural fate decisions mediated by trans-activation and cis-inhibition in Notch signaling.
Bioinformatics, 2011

Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis.
Proceedings of the Bio-Inspired Computing and Applications, 2011

2010
The effect of coupled feedback on noise filtering in signal transduction networks.
J. Systems Science & Complexity, 2010

Self-organizing map of complex networks for community detection.
J. Systems Science & Complexity, 2010

Editorial.
J. Systems Science & Complexity, 2010

A systems biology approach to identify effective cocktail drugs.
BMC Systems Biology, 2010

Optimization meets systems biology.
BMC Systems Biology, 2010

FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures.
BMC Systems Biology, 2010

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Systems Biology, 2010

Detecting disease associated modules and prioritizing active genes based on high throughput data.
BMC Bioinformatics, 2010

Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinformatics, 2010

Inferring gene regulatory networks from expression data with prior knowledge by linear programming.
Proceedings of the International Conference on Machine Learning and Cybernetics, 2010

Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting.
Proceedings of the Proteome Bioinformatics, 2010

2009
Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks.
Proceedings of the Fuzzy Systems in Bioinformatics and Computational Biology, 2009

Evaluating Protein Similarity from Coarse Structures.
IEEE/ACM Trans. Comput. Biology Bioinform., 2009

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
PLoS Computational Biology, 2009

Self-organizing map approaches for the haplotype assembly problem.
Mathematics and Computers in Simulation, 2009

Automatic Modeling of Signaling Pathways by Network Flow Model.
J. Bioinformatics and Computational Biology, 2009

Robustness of interval gene networks with multiple time-varying delays and noise.
Neurocomputing, 2009

Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli.
BMC Bioinformatics, 2009

Dynamically dysfunctional protein interactions in the development of Alzheimer's disease.
Proceedings of the IEEE International Conference on Systems, 2009

Analysis and Optimality on Network Traffic Flows.
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009

Multiple Phase Transitions in the Culture Dissemination.
Proceedings of the Complex Sciences, 2009

Analysis on steady states of photosynthetic carbon metabolic system.
Proceedings of the 48th IEEE Conference on Decision and Control, 2009

A New Balanced Ensemble Classifier for Predicting Fungi Protein Subcellular Localization Based on Protein Primary Structures.
Proceedings of the 2nd International Conference on BioMedical Engineering and Informatics, 2009

2008
Modeling and Analyzing Biological Oscillations in Molecular Networks.
Proceedings of the IEEE, 2008

Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.
Neurocomputing, 2008

Associative memory with a controlled chaotic neural network.
Neurocomputing, 2008

Protein function prediction with the shortest path in functional linkage graph and boosting.
IJBRA, 2008

Protein cavity clustering based on community structure of pocket similarity network.
IJBRA, 2008

Biomolecular network querying: a promising approach in systems biology.
BMC Systems Biology, 2008

Gene function prediction using labeled and unlabeled data.
BMC Bioinformatics, 2008

Domain-Domain Interaction Identification with a Feature Selection Approach.
Proceedings of the Pattern Recognition in Bioinformatics, 2008

A Novel Classifier Based on Enhanced Lipschitz Embedding for Speech Emotion Recognition.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2008

Reconstruction of Regulator Activity in E. coli Post-Transcription Processes.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
Stochastic Stability of Genetic Networks With Disturbance Attenuation.
IEEE Trans. on Circuits and Systems, 2007

Supervised classification of protein structures based on convex hull representation.
IJBRA, 2007

Stochastic synchronization of genetic oscillator networks.
BMC Systems Biology, 2007

Analysis on multi-domain cooperation for predicting protein-protein interactions.
BMC Bioinformatics, 2007

Predicting gene ontology functions from protein's regional surface structures.
BMC Bioinformatics, 2007

Inferring transcriptional regulatory networks from high-throughput data.
Bioinformatics, 2007

Alignment of molecular networks by integer quadratic programming.
Bioinformatics, 2007

Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Frequency Synchronization of a Set of Cells Coupled by Quorum Sensing.
Proceedings of the Life System Modeling and Simulation, International Conference, 2007

Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2007

Double Three-Level Inverter Based Variable Frequency Drive with Minimal Total Harmonic Distortion Using Particle Swarm Optimization.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2007

2006
Stability of Genetic Networks With SUM Regulatory Logic: Lur'e System and LMI Approach.
IEEE Trans. on Circuits and Systems, 2006

Designing Gene Regulatory Networks With Specified Functions.
IEEE Trans. on Circuits and Systems, 2006

Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples.
PLoS Computational Biology, 2006

Inferring gene regulatory networks from multiple microarray datasets.
Bioinformatics, 2006

Synchronizing a multicellular system by external input: an artificial control strategy.
Bioinformatics, 2006

Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.
Proceedings of the Theory and Applications of Models of Computation, 2006

Designing synthetic biological networks.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2006), 2006

Forecasting Electricity Demand by Hybrid Machine Learning Model.
Proceedings of the Neural Information Processing, 13th International Conference, 2006

Supervised Inference of Gene Regulatory Networks by Linear Programming.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

2005
Aligning Multiple Protein Structures by Deterministic Annealing.
J. Bioinformatics and Computational Biology, 2005

Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping.
J. Bioinformatics and Computational Biology, 2005

A parsimonious tree-grow method for haplotype inference.
Bioinformatics, 2005

Protein structure alignment by deterministic annealing.
Bioinformatics, 2005

Noise-induced cooperative behavior in a multicell system.
Bioinformatics, 2005

Peak Load Forecasting Using the Self-organizing Map.
Proceedings of the Advances in Neural Networks - ISNN 2005, Second International Symposium on Neural Networks, Chongqing, China, May 30, 2005

Cooperative dynamics coordinated by stochastic noise in a multi-cell system.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2005), 2005

Reducing Gene Regulatory Networks by Decomposition.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004
Designing Synthetic Biological Systems by Multiple Time Scale Networks.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Uniform asymptotic stability of hybrid dynamical systems with delay.
IEEE Trans. Automat. Contr., 2003

Multiple Protein Structure Alignment by Deterministic Annealing.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
Design of Genetic Switches with Only Positive Feedback Loops.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

Designing Oscillators in Synthetic Gene Networks Based on Multi-Scale Dynamics.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002

1995
Chaotic simulated annealing by a neural network model with transient chaos.
Neural Networks, 1995


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