Timothy F. Oliver

According to our database, Timothy F. Oliver authored at least 20 papers between 2003 and 2009.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2009

Wire level encapsulation framework for increasing FPGA design productivity

Timothy F. Oliver

PhD thesis, 2009

High Speed Biological Sequence Analysis With Hidden Markov Models on Reconfigurable Platforms.

Timothy F. Oliver, Bertil Schmidt, Yanto Jakop, Douglas L. Maskell

IEEE Trans. Inf. Technol. Biomed., 2009

2008

Integrating FPGA acceleration into HMMer.

Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt

Parallel Comput., 2008

2007

MPI-HMMER-Boost: Distributed FPGA Acceleration.

John Paul Walters, Xiandong Meng, Vipin Chaudhary, Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt, Darran Nathan, Joseph I. Landman

J. VLSI Signal Process., 2007

Prerouted FPGA Cores for Rapid System Construction in a Dynamic Reconfigurable System.

Timothy F. Oliver, Douglas L. Maskell

EURASIP J. Embed. Syst., 2007

C-Based Design Methodology for FPGA Implementation of ClustalW MSA.

Yan Lin Aung, Douglas L. Maskell, Timothy F. Oliver, Bertil Schmidt, William Bong

Proceedings of the Pattern Recognition in Bioinformatics, 2007

High Performance Database Searching with HMMer on FPGAs.

Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006

High-speed Multiple Sequence Alignment on a reconfigurable platform.

Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens

Int. J. Bioinform. Res. Appl., 2006

Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware.

Timothy F. Oliver, Bertil Schmidt, Yanto Jakop, Douglas L. Maskell

Proceedings of the Computational Science, 2006

Execution Objects for Dynamically Reconfigurable FPGA Systems.

Timothy F. Oliver, Douglas L. Maskell

Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), 2006

Pre-Routed FPGA Cores for Rapid System Construction in a Dynamic Reconfigurable System.

Douglas L. Maskell, Timothy F. Oliver

Proceedings of the Dynamically Reconfigurable Architectures, 02.04. - 07.04.2006, 2006

2005

Reconfigurable architectures for bio-sequence database scanning on FPGAs.

Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell

IEEE Trans. Circuits Syst. II Express Briefs, 2005

Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.

Timothy F. Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas L. Maskell

Bioinform., 2005

A reconfigurable architecture for scanning biosequence databases.

Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Achutavarrier Prasad Vinod

Proceedings of the International Symposium on Circuits and Systems (ISCAS 2005), 2005

Multiple Sequence Alignment on an FPGA.

Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens

Proceedings of the 11th International Conference on Parallel and Distributed Systems, 2005

An FPGA Model for Developing Dynamic Circuit Computing.

Timothy F. Oliver, Douglas L. Maskell

Proceedings of the 2005 IEEE International Conference on Field-Programmable Technology, 2005

Hyper customized processors for bio-sequence database scanning on FPGAs.

Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell

Proceedings of the ACM/SIGDA 13th International Symposium on Field Programmable Gate Arrays, 2005

Biological Sequence Analysis with Hidden Markov Models on an FPGA.

Jacop Yanto, Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell

Proceedings of the Advances in Computer Systems Architecture, 10th Asia-Pacific Conference, 2005

2004

High Performance Biosequence Database Scanning on Reconfigurable Platforms.

Timothy F. Oliver, Bertil Schmidt

Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

2003

Towards Run-Time Re-Configurable Techniques for Real-Time Embedded Applications.

Timothy F. Oliver, Douglas L. Maskell

Proceedings of the International Conference on Engineering of Reconfigurable Systems and Algorithms, June 23, 2003