Bertil Schmidt
Orcid: 0000-0003-2597-8331Affiliations:
- Johannes Gutenberg University Mainz, Germany
According to our database1,
Bertil Schmidt
authored at least 213 papers
between 1995 and 2024.
Collaborative distances:
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Bibliography
2024
Comput. Phys. Commun., January, 2024
2023
Redesign and Accelerate the AIREBO Bond-Order Potential on the New Sunway Supercomputer.
IEEE Trans. Parallel Distributed Syst., December, 2023
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures.
Bioinform., October, 2023
Bio-ESMD: A Data Centric Implementation for Large-Scale Biological System Simulation on Sunway TaihuLight Supercomputer.
IEEE Trans. Parallel Distributed Syst., March, 2023
RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Automated Identification and Location of Three Dimensional Atmospheric Frontal Systems.
Proceedings of the Computational Science - ICCS 2023, 2023
Proceedings of the Euro-Par 2023: Parallel Processing - 29th International Conference on Parallel and Distributed Computing, Limassol, Cyprus, August 28, 2023
2022
IEEE Trans. Parallel Distributed Syst., 2022
Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning.
IEEE Trans. Parallel Distributed Syst., 2022
Optimization of Reactive Force Field Simulation: Refactor, Parallelization, and Vectorization for Interactions.
IEEE Trans. Parallel Distributed Syst., 2022
J. Parallel Distributed Comput., 2022
General-purpose GPU hashing data structures and their application in accelerated genomics.
J. Parallel Distributed Comput., 2022
RNACache: A scalable approach to rapid transcriptomic read mapping using locality sensitive hashing.
J. Comput. Sci., 2022
CARE 2.0: reducing false-positive sequencing error corrections using machine learning.
BMC Bioinform., 2022
Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data.
BMC Bioinform., 2022
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.
Bioinform., 2022
Proceedings of the 21st International Symposium on Parallel and Distributed Computing, 2022
Proceedings of the ICS '22: 2022 International Conference on Supercomputing, Virtual Event, June 28, 2022
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures.
Bioinform., 2021
Proceedings of the ICPP 2021: 50th International Conference on Parallel Processing, Lemont, IL, USA, August 9, 2021
Proceedings of the Computational Science - ICCS 2021, 2021
Proceedings of the 28th IEEE International Conference on High Performance Computing, 2021
2020
IEEE Trans. Parallel Distributed Syst., 2020
Millimeter-Scale and Billion-Atom Reactive Force Field Simulation on Sunway Taihulight.
IEEE Trans. Parallel Distributed Syst., 2020
RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads.
BMC Bioinform., 2020
Cell-list based molecular dynamics on many-core processors: a case study on sunway TaihuLight supercomputer.
Proceedings of the International Conference for High Performance Computing, 2020
Proceedings of the PPoPP '20: 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2020
Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020
Proceedings of the ICPP 2020: 49th International Conference on Parallel Processing, 2020
Proceedings of the Computational Science - ICCS 2020, 2020
Proceedings of the 27th IEEE International Conference on High Performance Computing, 2020
Proceedings of the Euro-Par 2020: Parallel Processing, 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
Massively parallel computation of atmospheric neutrino oscillations on CUDA-enabled accelerators.
Comput. Phys. Commun., 2019
BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures.
Bioinform., 2019
Bioinform., 2019
Proceedings of the 48th International Conference on Parallel Processing, 2019
Proceedings of the 48th International Conference on Parallel Processing, 2019
Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing, 2019
Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019
Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019
2018
LightSpMV: Faster CUDA-Compatible Sparse Matrix-Vector Multiplication Using Compressed Sparse Rows.
J. Signal Process. Syst., 2018
Proc. ACM Program. Lang., 2018
parSRA: A framework for the parallel execution of short read aligners on compute clusters.
J. Comput. Sci., 2018
BMC Bioinform., 2018
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018
SPECTR: Scalable Parallel Short Read Error Correction on Multi-core and Many-core Architectures.
Proceedings of the 47th International Conference on Parallel Processing, 2018
Proceedings of the 47th International Conference on Parallel Processing, 2018
Proceedings of the 24th IEEE International Conference on Parallel and Distributed Systems, 2018
2017
J. Supercomput., 2017
SAUCE: A web application for interactive teaching and learning of parallel programming.
J. Parallel Distributed Comput., 2017
$ν$-net: Deep Learning for Generalized Biventricular Cardiac Mass and Function Parameters.
CoRR, 2017
Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs.
Clust. Comput., 2017
BMC Bioinform., 2017
BMC Bioinform., 2017
Bioinform., 2017
AFS: identification and quantification of species composition by metagenomic sequencing.
Bioinform., 2017
SWhybrid: A Hybrid-Parallel Framework for Large-Scale Protein Sequence Database Search.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017
PUNAS: A Parallel Ungapped-Alignment-Featured Seed Verification Algorithm for Next-Generation Sequencing Read Alignment.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017
Proceedings of the 2017 IEEE International Conference on Cluster Computing, 2017
Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017
Proceedings of the Algorithms for Next-Generation Sequencing Data, Techniques, 2017
2016
IEEE Trans. Parallel Distributed Syst., 2016
ACM Trans. Knowl. Discov. Data, 2016
Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016
Parallel Comput., 2016
CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm.
Int. J. High Perform. Comput. Appl., 2016
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations.
BMC Syst. Biol., 2016
Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.
BMC Bioinform., 2016
rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.
BMC Bioinform., 2016
Bioinform., 2016
Bioinform., 2016
Proceedings of the Euro-Par 2016: Parallel Processing Workshops, 2016
Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS.
Proceedings of the 27th IEEE International Conference on Application-specific Systems, 2016
2015
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
J. Comput. Sci., 2015
GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies.
J. Comput. Sci., 2015
Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model.
Int. J. High Perform. Comput. Appl., 2015
GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences.
Concurr. Comput. Pract. Exp., 2015
Proceedings of the Euro-Par 2015: Parallel Processing Workshops, 2015
SNVSniffer: An integrated caller for germline and somatic SNVs based on Bayesian models.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
LightSpMV: Faster CSR-based sparse matrix-vector multiplication on CUDA-enabled GPUs.
Proceedings of the 26th IEEE International Conference on Application-specific Systems, 2015
2014
IEEE Des. Test, 2014
HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data.
BMC Bioinform., 2014
Proceedings of the 26th IEEE International Symposium on Computer Architecture and High Performance Computing, 2014
GEM: an elastic and translation-invariant similarity measure with automatic trend adjustment.
Proceedings of the Symposium on Applied Computing, 2014
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014
Proceedings of the 43rd International Conference on Parallel Processing, 2014
Proceedings of the International Conference on Computational Science, 2014
Proceedings of the International Conference on Computational Science, 2014
Proceedings of the Euro-Par 2014 Parallel Processing, 2014
Proceedings of the 2014 IEEE International Conference on Cluster Computing, 2014
Proceedings of the 2014 IEEE International Conference on Cluster Computing, 2014
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
Proceedings of the IEEE 25th International Conference on Application-Specific Systems, 2014
2013
IEEE Trans. Very Large Scale Integr. Syst., 2013
Parallel Comput., 2013
Iterative sparse matrix-vector multiplication for accelerating the block Wiedemann algorithm over GF(2) on multi-graphics processing unit systems.
Concurr. Comput. Pract. Exp., 2013
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.
BMC Bioinform., 2013
Musket: a multistage <i>k-</i>mer spectrum-based error corrector for Illumina sequence data.
Bioinform., 2013
Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences.
Proceedings of the Parallel Processing and Applied Mathematics, 2013
2012
Proceedings of the International Conference on Computational Science, 2012
Proceedings of the International Conference on Computational Science, 2012
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
Bioinform., 2012
Evaluation of GPU-based Seed Generation for Computational Genomics Using Burrows-Wheeler Transform.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012
Proceedings of the 22nd International Conference on Field Programmable Logic and Applications (FPL), 2012
Proceedings of the ACM/SIGDA 20th International Symposium on Field Programmable Gate Arrays, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Proceedings of the International Conference on Computational Science, 2011
BMC Bioinform., 2011
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.
BMC Bioinform., 2011
CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments.
Bioinform., 2011
CRiSPy-CUDA: Computing Species Richness in 16S rRNA Pyrosequencing Datasets with CUDA.
Proceedings of the Pattern Recognition in Bioinformatics, 2011
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011
Proceedings of the 17th IEEE International Conference on Parallel and Distributed Systems, 2011
Proceedings of the Euro-Par 2011 Parallel Processing - 17th International Conference, 2011
2010
Proceedings of the International Conference on Computational Science, 2010
Proceedings of the International Conference on Computational Science, 2010
CUDA-MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units.
Pattern Recognit. Lett., 2010
A Parallel Algorithm for Error Correction in High-Throughput Short-Read Data on CUDA-Enabled Graphics Hardware.
J. Comput. Biol., 2010
Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architectures.
Bioinform., 2010
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
Bioinform., 2010
Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
High Speed Biological Sequence Analysis With Hidden Markov Models on Reconfigurable Platforms.
IEEE Trans. Inf. Technol. Biomed., 2009
Sci. Program., 2009
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009
Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine.
Proceedings of the Computational Science, 2009
Proceedings of the Computational Science, 2009
Proceedings of the 20th IEEE International Conference on Application-Specific Systems, 2009
Proceedings of the Architecture of Computing Systems, 2009
2008
IEEE Trans. Inf. Technol. Biomed., 2008
Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA.
Comput. Phys. Commun., 2008
Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment.
BMC Bioinform., 2008
Proceedings of the Pattern Recognition in Bioinformatics, 2008
Proceedings of the Pattern Recognition in Bioinformatics, 2008
2007
Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics.
J. VLSI Signal Process., 2007
Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective.
J. VLSI Signal Process., 2007
IEEE Trans. Parallel Distributed Syst., 2007
Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms.
BMC Bioinform., 2007
Proceedings of the 13th IEEE International Conference on Embedded and Real-Time Computing Systems and Applications (RTCSA 2007), 2007
Proceedings of the Pattern Recognition in Bioinformatics, 2007
Proceedings of the Parallel Processing and Applied Mathematics, 2007
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007
Proceedings of the 2007 International Conference on Parallel Processing (ICPP 2007), 2007
Proceedings of the High Performance Computing, 2007
Proceedings of the Advanced Parallel Processing Technologies, 7th International Symposium, 2007
Proceedings of the Grid Computing for Bioinformatics and Computational Biology, 2007
2006
IEEE Trans. Parallel Distributed Syst., 2006
J. Parallel Distributed Comput., 2006
Int. J. Bioinform. Res. Appl., 2006
Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids.
IEICE Trans. Inf. Syst., 2006
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006
Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware.
Proceedings of the Computational Science, 2006
Proceedings of the High Performance Computing, 2006
Proceedings of the Applications of Evolutionary Computing, 2006
Proceedings of the IEEE Asia Pacific Conference on Circuits and Systems 2006, 2006
2005
IEEE Trans. Circuits Syst. II Express Briefs, 2005
Future Gener. Comput. Syst., 2005
Concurr. Comput. Pract. Exp., 2005
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
Bioinform., 2005
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2005), 2005
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005
Proceedings of the Intelligent Data Engineering and Automated Learning, 2005
Proceedings of the 11th International Conference on Parallel and Distributed Systems, 2005
Proceedings of the ACM/SIGDA 13th International Symposium on Field Programmable Gate Arrays, 2005
Proceedings of the Euro-Par 2005, Parallel Processing, 11th International Euro-Par Conference, Lisbon, Portugal, August 30, 2005
Proceedings of the Advances in Computer Systems Architecture, 10th Asia-Pacific Conference, 2005
2004
Parallel Algorithms Appl., 2004
Concurr. Pract. Exp., 2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
A Tunable Coarse-Grained Parallel Algorithm for Irregular Dynamic Programming Applications.
Proceedings of the High Performance Computing, 2004
Proceedings of the High Performance Computing, 2004
Proceedings of the Euro-Par 2004 Parallel Processing, 2004
Performance analysis of computational biology applications on hierarchical Grid systems.
Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004
2003
An Area-Efficient Bit-Serial Integer Multiplier.
Proceedings of the International Conference on VLSI, 2003
Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2003
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003
Parallel Design Pattern for Computational Biology and Scientific Computing Applications.
Proceedings of the 2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 2003
Proceedings of the 2003 IEEE International Conference on Cluster Computing (CLUSTER 2003), 2003
2002
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
2001
Comput. Artif. Intell., 2001
Proceedings of the Parallel Computing Technologies, 2001
Proceedings of the Euro-Par 2001: Parallel Processing, 2001
2000
Scalable Comput. Pract. Exp., 2000
Proceedings of the Euro-Par 2000, Parallel Processing, 6th International Euro-Par Conference, Munich, Germany, August 29, 2000
1999
Comput. Artif. Intell., 1999
Proceedings of the Euro-Par '99 Parallel Processing, 5th International Euro-Par Conference, Toulouse, France, August 31, 1999
1998
Long Operand Arithmetic on Instruction Systolic Computer Architectures and Its Application in RSA Cryptography.
Proceedings of the Euro-Par '98 Parallel Processing, 1998
1997
Proceedings of the Euro-Par '97 Parallel Processing, 1997
1995
Proceedings of the Mustererkennung 1995, 1995