Tom R. Gaunt

According to our database, Tom R. Gaunt authored at least 27 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Assessing the effects of hyperparameters on knowledge graph embedding quality.

Oliver Lloyd, Yi Liu, Tom R. Gaunt

J. Big Data, December, 2023

Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets.

Yi Liu, Benjamin L. Elsworth, Tom R. Gaunt

Bioinform., April, 2023

2021

An informatics consult approach for generating clinical evidence for treatment decisions.

Alvina Grace Lai, Wai Hoong Chang, Constantinos A. Parisinos, Michail Katsoulis, Ruth M. Blackburn, Anoop D. Shah, Vincent Nguyen, Spiros C. Denaxas, George Davey Smith, Tom R. Gaunt, Krishnarajah Nirantharakumar, Murray P. Cox, Donall Forde, Folkert W. Asselbergs, Steve K. Harris, Sylvia Richardson, Reecha Sofat, Richard J. B. Dobson, Aroon D. Hingorani, Riyaz Patel, Jonathan Sterne, Amitava Banerjee, Alastair K. Denniston, Simon Ball, Neil J. Sebire, Nigam H. Shah, Graham R. Foster, Bryan Williams, Harry Hemingway

BMC Medical Informatics Decis. Mak., 2021

MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes.

M. K. Sobczyk, Tom R. Gaunt, Lavinia Paternoster

Bioinform., 2021

EpiGraphDB: a database and data mining platform for health data science.

Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt

Bioinform., 2021

Erratum to: EpiGraphDB: a database and data mining platform for health data science.

Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt

Bioinform., 2021

MELODI Presto: a fast and agile tool to explore semantic triples derived from biomedical literature.

Benjamin L. Elsworth, Tom R. Gaunt

Bioinform., 2021

Prediction of driver variants in the cancer genome via machine learning methodologies.

Mark F. Rogers, Tom R. Gaunt, Colin Campbell

Briefings Bioinform., 2021

2020

CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome.

Mark F. Rogers, Tom R. Gaunt, Colin Campbell

Bioinform., 2020

2018

FATHMM-XF: accurate prediction of pathogenic point mutations via extended features.

Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell

Bioinform., 2018

2017

GTB - an online genome tolerance browser.

Hashem A. Shihab, Mark F. Rogers, Michael Ferlaino, Colin Campbell, Tom R. Gaunt

BMC Bioinform., 2017

An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome.

Michael Ferlaino, Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell

BMC Bioinform., 2017

HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics.

Jie Zheng, Santiago Rodríguez, Charles Laurin, Denis Baird, Lea Trela-Larsen, Mesut A. Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh, Richard Morris, Meena Kumari, Juan P. Casas, Aroon D. Hingorani, David M. Evans, Tom R. Gaunt, Ian N. M. Day

Bioinform., 2017

LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis.

Jie Zheng, Mesut A. Erzurumluoglu, Benjamin L. Elsworth, John P. Kemp, Laurence J. Howe, Philip C. Haycock, Gibran Hemani, Katherine Tansey, Charles Laurin, Early Genetics, Lifecourse Epidemiology (EAGLE) Eczema Consortium, Beate St. Pourcain, Nicole M. Warrington, Hilary K. Finucane, Alkes L. Price, Brendan K. Bulik-Sullivan, Verneri Anttila, Lavinia Paternoster, Tom R. Gaunt, David M. Evans, Benjamin M. Neale

Bioinform., 2017

HIPred: an integrative approach to predicting haploinsufficient genes.

Hashem A. Shihab, Mark F. Rogers, Colin Campbell, Tom R. Gaunt

Bioinform., 2017

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals.

Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie

BioData Min., 2017

2015

Texture classification using feature selection and kernel-based techniques.

Carlos Fernandez-Lozano, José Antonio Seoane Fernández, Marcos Gestal, Tom R. Gaunt, Julián Dorado, Colin Campbell

Soft Comput., 2015

An integrative approach to predicting the functional effects of non-coding and coding sequence variation.

Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell

Bioinform., 2015

Sequential data selection for predicting the pathogenic effects of sequence variation.

Mark F. Rogers, Colin Campbell, Hashem A. Shihab, Tom R. Gaunt, Matthew E. Mort, David N. Cooper

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery.

José A. Seoane, Colin Campbell, Ian N. M. Day, Juan P. Casas, Tom R. Gaunt

PLoS Comput. Biol., 2014

A pathway-based data integration framework for prediction of disease progression.

José A. Seoane, Ian N. M. Day, Tom R. Gaunt, Colin Campbell

Bioinform., 2014

Using a Random Forest proximity measure for variable importance stratification in genotypic data.

José A. Seoane, Ian N. M. Day, Colin Campbell, Juan P. Casas, Tom R. Gaunt

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

A Random Forest proximity matrix as a new measure for gene annotation.

José A. Seoane, Ian N. M. Day, Juan P. Casas, Colin Campbell, Tom R. Gaunt

Proceedings of the 22th European Symposium on Artificial Neural Networks, 2014

2013

Predicting the functional consequences of cancer-associated amino acid substitutions.

Hashem A. Shihab, Julian Gough, David N. Cooper, Ian N. M. Day, Tom R. Gaunt

Bioinform., 2013

Texture Classification Using Kernel-Based Techniques.

Carlos Fernandez-Lozano, José A. Seoane, Marcos Gestal, Tom R. Gaunt, Colin Campbell

Proceedings of the Advances in Computational Intelligence, 2013

2007

Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'.

Tom R. Gaunt, Santiago Rodríguez, Ian N. M. Day

BMC Bioinform., 2007

2006

MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers.

Tom R. Gaunt, Santiago Rodríguez, Carlos Zapata, Ian N. M. Day

BMC Bioinform., 2006