Tommaso Mazza

According to our database1, Tommaso Mazza authored at least 36 papers between 2004 and 2018.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 





Molecular dynamics recipes for genome research.
Briefings in Bioinformatics, 2018

High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE.
PLoS Computational Biology, 2017

Functional Impact of Autophagy-Related Genes on the Homeostasis and Dynamics of Pancreatic Cancer Cell Lines.
IEEE/ACM Trans. Comput. Biology Bioinform., 2015

Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a.
Biosystems, 2013

A solid quality-control analysis of AB SOLiD short-read sequencing data.
Briefings in Bioinformatics, 2013

Congruency in the prediction of pathogenic missense mutations: state-of-the-art web-based tools.
Briefings in Bioinformatics, 2013

Estimating the global density of graphs by a sparseness index.
Applied Mathematics and Computation, 2013

Multi-Sided Compression Performance Assessment of ABI SOLiD WES Data.
Algorithms, 2013

The Relevance of Topology in Parallel Simulation of Biological Networks.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

High Performance Computational Systems Biology.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Modeling and Simulation of Smart and Green Computing Systems.
IEEE Computer, 2012

AURA: Atlas of UTR Regulatory Activity.
Bioinformatics, 2012

Stability analysis of biological network topologies during stochastic simulation.
Proceedings of the 4th International ICST Conference on Simulation Tools and Techniques, 2011

Snazer: the simulations and networks analyzer.
BMC Systems Biology, 2010

Estimating the divisibility of complex biological networks by sparseness indices.
Briefings in Bioinformatics, 2010

Editorial: Accelerating systems biology.
Briefings in Bioinformatics, 2010

Cell Cycle and Tumor Growth in Membrane Systems with Peripheral Proteins.
Electr. Notes Theor. Comput. Sci., 2009

Studying Irreversible Transitions in a Model of Cell Cycle Regulation.
Electr. Notes Theor. Comput. Sci., 2009

Efficient Parallel Statistical Model Checking of Biochemical Networks
Proceedings of the Proceedings 8th International Workshop on Parallel and Distributed Methods in verifiCation, 2009

Taming the complexity of biological pathways through parallel computing.
Briefings in Bioinformatics, 2009

Analyzing various models of Circadian Clock and Cell Cycle coupling.
Proceedings of the Formal Methods in Molecular Biology, 22.02. - 27.02.2009, 2009

On Parallel Stochastic Simulation of Diffusive Systems.
Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

Using ontologies for preprocessing and mining spectra data on the Grid.
Future Generation Comp. Syst., 2007

Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes.
Bioinformatics, 2007

Towards a Complete Covering of SBML Functionalities.
Proceedings of the Membrane Computing, 8th International Workshop, 2007

Managing ontologies for Grid computing.
Multiagent and Grid Systems, 2006

Mitotic Oscillators as MP Graphs.
Proceedings of the Membrane Computing, 7th International Workshop, 2006

Analysis and Classification of Proteomics Data, a Case Study.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

On the Preprocessing of Mass Spectrometry Proteomics Data.
Proceedings of the Neural Nets, 16th Italian Workshop on Neural Nets, 2005

Distributed Management of Ontologies on the Grid.
Proceedings of the 14th IEEE International Workshops on Enabling Technologies (WETICE 2005), 2005

MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid.
Proceedings of the 2005 International Conference on Semantics, 2005

Algorithms and Databases in Bioinformatics: Towards a Proteomic Ontology.
Proceedings of the International Symposium on Information Technology: Coding and Computing (ITCC 2005), 2005

Using Ontologies in PROTEUS for Modeling Proteomics Data Mining Applications.
Proceedings of the From Grid to Healthgrid, 2005

Preprocessing of Mass Spectrometry Proteomics Data on the Grid.
Proceedings of the 18th IEEE Symposium on Computer-Based Medical Systems (CBMS 2005), 2005

Mass Spectrometry Data Analysis for Early Detection of Inherited Breast Cancer.
Proceedings of the Biological and Artificial Intelligence Environments, 2004

Using PROTEUS for Modeling Data Mining Analysis of Proteomics Experiments on the Grid.
Proceedings of the On the Move to Meaningful Internet Systems 2004: OTM 2004 Workshops: OTM Confederated International Workshops and Posters, 2004