Sylvain Soliman

Orcid: 0000-0001-5525-7418

Affiliations:
  • Inria, Lifeware Group, Palaiseau, France
  • Paris Diderot University, Paris, France (PhD 2001)


According to our database1, Sylvain Soliman authored at least 61 papers between 1998 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Scalable Enumeration of Trap Spaces in Boolean Networks via Answer Set Programming.
Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023
Trap spaces of Boolean networks are conflict-free siphons of their Petri net encoding.
Theor. Comput. Sci., September, 2023

Efficient Enumeration of Fixed Points in Complex Boolean Networks Using Answer Set Programming.
Proceedings of the 29th International Conference on Principles and Practice of Constraint Programming, 2023

2022
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach.
PLoS Comput. Biol., December, 2022

Addressing <i>barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology</i>.
Briefings Bioinform., 2022

Minimal Trap Spaces of Logical Models are Maximal Siphons of Their Petri Net Encoding.
Proceedings of the Computational Methods in Systems Biology, 2022

2021
Model learning to identify systemic regulators of the peripheral circadian clock.
Bioinform., 2021

Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Briefings Bioinform., 2021

Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs.
Proceedings of the Computational Methods in Systems Biology, 2021

2020
Automated inference of Boolean models from molecular interaction maps using CaSQ.
Bioinform., 2020

On the Complexity of Quadratization for Polynomial Differential Equations.
Proceedings of the Computational Methods in Systems Biology, 2020

Graphical Conditions for Rate Independence in Chemical Reaction Networks.
Proceedings of the Computational Methods in Systems Biology, 2020

2019
On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics.
Proceedings of the Computational Methods in Systems Biology, 2019

2018
Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Graphical Requirements for Multistationarity in Reaction Networks and their Verification in BioModels.
CoRR, 2018

On Robustness Computation and Optimization in BIOCHAM-4.
Proceedings of the Computational Methods in Systems Biology, 2018

2017
Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data.
Proceedings of the Computational Methods in Systems Biology, 2017

2016
On enumerating minimal siphons in Petri nets using CLP and SAT solvers: theoretical and practical complexity.
Constraints An Int. J., 2016

Model-based investigation of the circadian clock and cell cycle coupling in mouse embryonic fibroblasts: Prediction of RevErb-α up-regulation during mitosis.
Biosyst., 2016

Influence Systems vs Reaction Systems.
Proceedings of the Computational Methods in Systems Biology, 2016

A structural perspective on the dynamics of biochemical systems. (Une perspective structurelle sur la dynamique des systèmes biochimiques).
, 2016

2015
Hybrid Simulations of Heterogeneous Biochemical Models in SBML.
ACM Trans. Model. Comput. Simul., 2015

Inferring reaction systems from ordinary differential equations.
Theor. Comput. Sci., 2015

Search by constraint propagation.
Proceedings of the 17th International Symposium on Principles and Practice of Declarative Programming, 2015

Model-Based Investigation of the Effect of the Cell Cycle on the Circadian Clock Through Transcription Inhibition During Mitosis.
Proceedings of the Computational Methods in Systems Biology, 2015

2014
On the subgraph epimorphism problem.
Discret. Appl. Math., 2014

A constraint solving approach to model reduction by tropical equilibration.
Algorithms Mol. Biol., 2014

Trace Simplifications Preserving Temporal Logic Formulae with Case Study in a Coupled Model of the Cell Cycle and the Circadian Clock.
Proceedings of the Computational Methods in Systems Biology, 2014

2013
Guest Editors' Introduction to the Special Section on Computational Methods in Systems Biology.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Un modèle booléen pour l'énumération des siphons et des pièges minimaux dans les réseaux de Petri
CoRR, 2013

On the Hybrid Composition and Simulation of Heterogeneous Biochemical Models.
Proceedings of the Computational Methods in Systems Biology, 2013

2012
Invariants and Other Structural Properties of Biochemical Models as a Constraint Satisfaction Problem.
Algorithms Mol. Biol., 2012

A Boolean Model for Enumerating Minimal Siphons and Traps in Petri Nets.
Proceedings of the Principles and Practice of Constraint Programming, 2012

Inferring Reaction Models from ODEs.
Proceedings of the Computational Methods in Systems Biology, 2012

2011
Continuous valuations of temporal logic specifications with applications to parameter optimization and robustness measures.
Theor. Comput. Sci., 2011

Design, optimization and predictions of a coupled model of the cell cycle, circadian clock, DNA repair system, irinotecan metabolism and exposure control under temporal logic constraints.
Theor. Comput. Sci., 2011

2010
Computational Systems Biology in BIOCHAM.
ERCIM News, 2010

A graphical method for reducing and relating models in systems biology.
Bioinform., 2010

Steady-state solution of biochemical systems, beyond S-systems via T-invariants.
Proceedings of the Computational Methods in Systems Biology, 8th International Conference, 2010

2009
Modelling Biochemical Reaction Networks with BIOCHAM Extracting Qualitative and Quantitative Information from the Structure.
Simul. Notes Eur., 2009

A general computational method for robustness analysis with applications to synthetic gene networks.
Bioinform., 2009

Analyzing various models of Circadian Clock and Cell Cycle coupling.
Proceedings of the Formal Methods in Molecular Biology, 22.02. - 27.02.2009, 2009

On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle.
Proceedings of the Computational Methods in Systems Biology, 7th International Conference, 2009

2008
Abstract interpretation and types for systems biology.
Theor. Comput. Sci., 2008

Formal Cell Biology in Biocham.
Proceedings of the Formal Methods for Computational Systems Biology, 2008

Model Revision from Temporal Logic Properties in Computational Systems Biology.
Proceedings of the Probabilistic Inductive Logic Programming - Theory and Applications, 2008

From Reaction Models to Influence Graphs and Back: A Theorem.
Proceedings of the Formal Methods in Systems Biology, First International Workshop, 2008

On a Continuous Degree of Satisfaction of Temporal Logic Formulae with Applications to Systems Biology.
Proceedings of the Computational Methods in Systems Biology, 6th International Conference, 2008

2007
Langages formels dans la machine abstraite biochimique BIOCHAM.
Tech. Sci. Informatiques, 2007

Patient-Tailored Cancer Therapeutics - The Tempo Project.
ERCIM News, 2007

Closures and Modules Within Linear Logic Concurrent Constraint Programming.
Proceedings of the FSTTCS 2007: Foundations of Software Technology and Theoretical Computer Science, 2007

2006
Machine Learning Biochemical Networks from Temporal Logic Properties.
Trans. Comp. Sys. Biology, 2006

BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
Bioinform., 2006

Type Inference in Systems Biology.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2006

2004
CLPGUI: A Generic Graphical User Interface for Constraint Logic Programming.
Constraints An Int. J., 2004

Pi-calcul et LCC, une odyssée de l'espace.
Proceedings of the Programmation en logique avec contraintes, 2004

CMBSlib: A Library for Comparing Formalisms and Models of Biological Systems.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2004

The Biochemical Abstract Machine BIOCHAM.
Proceedings of the Computational Methods in Systems Biology, International Conference, 2004

2001
Concurrent constraint programming and linear logic.
PhD thesis, 2001

Linear Concurrent Constraint Programming: Operational and Phase Semantics.
Inf. Comput., 2001

1998
Phase Semantics and Verification of Concurrent Constraint Programs.
Proceedings of the Thirteenth Annual IEEE Symposium on Logic in Computer Science, 1998


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