Uri Hershberg

According to our database, Uri Hershberg authored at least 12 papers between 2001 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2017

A spatially heterogeneous Gillespie algorithm modeling framework that enables individual molecule history and tracking.

Justin Melunis, Uri Hershberg

Eng. Appl. Artif. Intell., 2017

Detection of network communities with memory-biased random walk algorithms.

Mesut Yucel, Lev Muchnik, Uri Hershberg

J. Complex Networks, 2017

ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data.

Aaron M. Rosenfeld, Wenzhao Meng, Eline T. Luning Prak, Uri Hershberg

Bioinform., 2017

MiGHT, a multi-level Gillespie hybrid tracked modeling framework which allows for cellular and environmental adaptivity.

Justin Melunis, Uri Hershberg

Proceedings of the 2017 IEEE Symposium Series on Computational Intelligence, 2017

2016

Using a novel clumpiness measure to unite data with metadata: Finding common sequence patterns in immune receptor germline V genes.

Gregory W. Schwartz, Ali Shokoufandeh, Santiago Ontañón, Uri Hershberg

Pattern Recognit. Lett., 2016

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.

Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell

BMC Bioinform., 2016

Efficient approximation of labeling problems with applications to immune repertoire analysis.

Yusuf Osmanlioglu, Santiago Ontañón, Uri Hershberg, Ali Shokoufandeh

Proceedings of the 23rd International Conference on Pattern Recognition, 2016

2013

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.

Elena Zaslavsky, German Nudelman, Susanna Marquez, Uri Hershberg, Boris M. Hartmann, Juilee Thakar, Stuart C. Sealfon, Steven H. Kleinstein

BMC Bioinform., 2013

2011

Detecting selection in immunoglobulin sequences.

Mohamed Uduman, Gur Yaari, Uri Hershberg, Jacob A. Stern, Mark J. Shlomchik, Steven H. Kleinstein

Nucleic Acids Res., 2011

2005

Postext - A Mind for Society.

Avishalom Shalit, Tom Erez, Anna Deters, Uri Hershberg, Eran Shir, Sorin Solomon

Proceedings of the Adaptive Agents and Multi-Agent Systems II: Adaptation and Multi-Agent Learning, 2005

2003

Useful examples and a new model of the immune system.

Uri Hershberg

Rev. d'Intelligence Artif., 2003

2001

The immune system and other cognitive systems.

Uri Hershberg, Sol Efroni

Complex., 2001