João Carlos Setubal

According to our database, João Carlos Setubal authored at least 33 papers between 1991 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

PlantSimLab - a modeling and simulation web tool for plant biologists.

S. Ha, Elena S. Dimitrova, Stefan Hoops, Doaa Altarawy, Mitra Ansariola, D. Deb, Jane Glazebrook, R. Hillmer, Hossameldin Shahin, Fumiaki Katagiri, J. McDowell, Molly Megraw, João C. Setubal, B. M. Tyler, Reinhard C. Laubenbacher

BMC Bioinform., December, 2019

Machine learning meets genome assembly.

Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon Ferreira de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves

Briefings Bioinform., 2019

2018

TabPath: interactive tables for metabolic pathway analysis.

Lauro Ângelo Gonçalves de Moraes, Érica Barbosa Felestrino, Renata de Almeida Barbosa Assis, Diogo Matos, Joubert de Castro Lima, Leandro de Araújo Lima, Nalvo F. de Almeida Jr., João Carlos Setubal, Camila Carrião Machado Garcia, Leandro Márcio Moreira

Bioinform., 2018

2017

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

2015

TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013.

João C. Setubal, Nalvo F. Almeida

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

2014

Using Entropy Estimates for DAG-Based Ontologies.

Andrew S. Warren, João C. Setubal

CoRR, 2014

2012

SIS: a program to generate draft genome sequence scaffolds for prokaryotes.

Zanoni Dias, Ulisses Dias, João C. Setubal

BMC Bioinform., 2012

Sorting genomes using almost-symmetric inversions.

Zanoni Dias, Ulisses Dias, Lenwood S. Heath, João C. Setubal

Proceedings of the ACM Symposium on Applied Computing, 2012

2011

A Cloud Architecture for Bioinformatics Workflows.

Hugo Saldanha, Edward de Oliveira Ribeiro, Maristela Holanda, Aletéia P. F. Araújo, Genaína Nunes Rodrigues, Maria Emília Telles Walter, João Carlos Setubal, Alberto M. R. Dávila

Proceedings of the CLOSER 2011, 2011

A whole genome simulator of prokaryote genome evolution.

Kuan Yang, João Carlos Setubal

Proceedings of the ACM International Conference on Bioinformatics, 2011

Using inversion signatures to generate draft genome sequence scaffolds.

Zanoni Dias, Ulisses Dias, João C. Setubal

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

Global-scale distributed I/O with ParaMEDIC.

Pavan Balaji, Wu-chun Feng, Heshan Lin, Jeremy S. Archuleta, Satoshi Matsuoka, Andrew S. Warren, João Carlos Setubal, Ewing L. Lusk, Rajeev Thakur, Ian T. Foster, Daniel S. Katz, Shantenu Jha, K. Shinpaugh, Susan Coghlan, Daniel A. Reed

Concurr. Comput. Pract. Exp., 2010

Missing genes in the annotation of prokaryotic genomes.

Andrew S. Warren, Jeremy S. Archuleta, Wu-chun Feng, João Carlos Setubal

BMC Bioinform., 2010

A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes.

Ulisses Dias, Zanoni Dias, João C. Setubal

Proceedings of the Comparative Genomics - International Workshop, 2010

The Complexity and Application of Syntactic Pattern Recognition Using Finite Inductive Strings.

Elijah Myers, Paul S. Fisher, Keith Irwin, Jinsuk Baek, João C. Setubal

Proceedings of the Pattern Recognition in Bioinformatics, 2010

Homology prediction refinement and reconstruction of gene content and order of ancestral bacterial genomes.

Kuan Yang, João C. Setubal

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

The Genome Reverse Compiler: an explorative annotation tool.

Andrew S. Warren, João Carlos Setubal

BMC Bioinform., 2009

2007

PATRIC: The VBI PathoSystems Resource Integration Center.

E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg, H. R. Karur, Maulik Shukla, Jeetendra Soneja, Y. Tian, Tian Xue, Hyun Seung Yoo, Fengkai Zhang, C. Dharmanolla, N. V. Dongre, Joseph J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, Joseph L. Gabbard, Deborah Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng, C. Rupprecht, J. Vinje, Oswald Crasta, M. J. Czar, Allan Dickerman, J. Dana Eckart, Ron Kenyon, Rebecca Will, João C. Setubal, Bruno W. S. Sobral

Nucleic Acids Res., 2007

Brazilian Symposium on Bioinformatics.

João Carlos Setubal, Sergio Verjovski-Almeida

Comput. Biol. Medicine, 2007

2004

A framewok based in Web services orchestration for bioinformatics workflow management.

Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal

Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

Parsing BLAST results to find pseudogenes in bacterial genomes.

Patrícia Carrião, Marcelo Perez, João C. Setubal

Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

A method to determine homologous protein families based on graph cliques and profiles.

Nalvo F. de Almeida Jr., João C. Setubal, Marcelo de Carvalho, Carlos Juliano M. Viana

Proceedings of the III Brazilian Workshop on Bioinformatics, 2004

2003

New ways for automatic detection of contaminats in EST projects.

João Piazza, João C. Setubal

Proceedings of the II Brazilian Workshop on Bioinformatics, 2003

A relational database for COG data.

Marcelo Perez, Patrícia Carrião, João C. Setubal

Proceedings of the II Brazilian Workshop on Bioinformatics, 2003

A data model for comparative genomics.

Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal

Proceedings of the II Brazilian Workshop on Bioinformatics, 2003

2000

Finding Minimum Congestion Spanning Trees.

Renato Fonseca F. Werneck, João C. Setubal

ACM J. Exp. Algorithmics, 2000

1999

Finding Minimum Congestion Spanning Trees.

Renato Fonseca F. Werneck, João C. Setubal, Arlindo Flávio da Conceição

Proceedings of the Algorithm Engineering, 1999

1997

Augment or Push? A computational study of Bipartite Matching and Unit Capacity Flow Algorithms.

Boris V. Cherkassky, Andrew V. Goldberg, Paul Martin, João C. Setubal, Jorge Stolfi

Proceedings of the Workshop on Algorithm Engineering, 1997

Introduction to computational molecular biology.

João Carlos Setubal, João Meidanis

PWS Publishing Company, ISBN: 978-0-534-95262-4, 1997

1995

A Parallel Implementation of the Push-Relabel Algorithm for the Maximum Flow Problem.

Richard J. Anderson, João C. Setubal

J. Parallel Distributed Comput., 1995

Multiple Alignment of Biological Sequences with Gap Flexibility.

Joao Meidanis, João C. Setubal

Proceedings of the LATIN '95: Theoretical Informatics, 1995

1992

On the Parallel Implementation of Goldberg's Maximum Flow Algorithm.

Richard J. Anderson, João C. Setubal

Proceedings of the 4th Annual ACM Symposium on Parallel Algorithms and Architectures, 1992

1991

Goldberg's Algorithm for Maximum Flow in Perspective: A Computational Study.

Richard J. Anderson, João Carlos Setubal

Proceedings of the Network Flows And Matching, 1991