Wei-Sheng Wu

According to our database, Wei-Sheng Wu authored at least 32 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Identifying Human miRNA Target Sites via Learning the Interaction Patterns between miRNA and mRNA Segments.

Tzu-Hsien Yang, Jhih-Cheng Chen, Yuan-Han Lee, Shang-Yi Lu, Sheng-Hang Wu, Fang-Yuan Chang, Yan-Cheng Huang, Mei-Hsien Lee, Yan-Yuan Tseng, Wei-Sheng Wu

J. Chem. Inf. Model., 2024

2022

YMLA: A comparative platform to carry out functional enrichment analysis for multiple gene lists in yeast.

Tzu-Hsien Yang, Chia-Wei Hsu, Yan-Xiang Wang, Chien-Hung Yu, Jagat Rathod, Yan-Yuan Tseng, Wei-Sheng Wu

Comput. Biol. Medicine, 2022

2021

Identifying piRNA targets on mRNAs in C. elegans using a deep multi-head attention network.

Tzu-Hsien Yang, Sheng-Cian Shiue, Kuan-Yu Chen, Yan Yuan Tseng, Wei-Sheng Wu

BMC Bioinform., 2021

A tool for analyzing and visualizing ribo-seq data at the isoform level.

Wei-Sheng Wu, Yi-Hong Tsao, Sheng-Cian Shiue, Ting-Yu Chen, Yan Yuan Tseng, Joseph T. Tseng

BMC Bioinform., 2021

2020

YQFC: a web tool to compare quantitative biological features between two yeast gene lists.

Wei-Sheng Wu, Lai-Ji Wang, Han-Chen Yen, Yan Yuan Tseng

Database J. Biol. Databases Curation, 2020

2019

piRTarBase: a database of piRNA targeting sites and their roles in gene regulation.

Wei-Sheng Wu, Jordan S. Brown, Tsung-Te Chen, Yu-Han Chu, Wei-Che Huang, Shikui Tu, Heng-Chi Lee

Nucleic Acids Res., 2019

2018

pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans.

Wei-Sheng Wu, Wei-Che Huang, Jordan S. Brown, Donglei Zhang, Xiaoyan Song, Hao Chen, Shikui Tu, Zhiping Weng, Heng-Chi Lee

Nucleic Acids Res., 2018

YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast.

Wei-Sheng Wu, Hao-Ping Tu, Yu-Han Chu, Torbjörn E. M. Nordling, Yan Yuan Tseng, Hung-Jiun Liaw

Database J. Biol. Databases Curation, 2018

HRPDviewer: human ribosome profiling data viewer.

Wei-Sheng Wu, Yu-Xuan Jiang, Jer-Wei Chang, Yu-Han Chu, Yi-Hao Chiu, Yi-Hong Tsao, Torbjörn E. M. Nordling, Yan Yuan Tseng, Joseph T. Tseng

Database J. Biol. Databases Curation, 2018

2017

MVIAeval: a web tool for comprehensively evaluating the performance of a new missing value imputation algorithm.

Wei-Sheng Wu, Meng-Jhun Jhou

BMC Bioinform., 2017

YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules.

Wei-Sheng Wu, Pin-Han Chen, Tsung-Te Chen, Yan Yuan Tseng

Database J. Biol. Databases Curation, 2017

2016

CoopTFD: a repository for predicted yeast cooperative transcription factor pairs.

Wei-Sheng Wu, Fu-Jou Lai, Bor-Wen Tu, Darby Tien-Hao Chang

Database J. Biol. Databases Curation, 2016

2015

PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast.

Fu-Jou Lai, Hong-Tsun Chang, Wei-Sheng Wu

BMC Bioinform., December, 2015

2014

Topologically associating domains are stable units of replication-timing regulation Open.

Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert

Nat., 2014

cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.

Tzu-Hsien Yang, Chung-Ching Wang, Po-Cheng Hung, Wei-Sheng Wu

BMC Syst. Biol., 2014

A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae.

Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh, Darby Tien-Hao Chang

BMC Syst. Biol., 2014

Identifying cooperative transcription factors in yeast using multiple data sources.

Fu-Jou Lai, Mei-Huei Jhu, Chia-Chun Chiu, Yueh-Min Huang, Wei-Sheng Wu

BMC Syst. Biol., 2014

A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms.

Fu-Jou Lai, Hong-Tsun Chang, Yueh-Min Huang, Wei-Sheng Wu

BMC Syst. Biol., 2014

iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation.

Tzu-Hsien Yang, Hong-Tsun Chang, Eric S. L. Hsiao, Juo-Ling Sun, Chung-Ching Wang, Hsin-Yi Wu, Pao-Chi Liao, Wei-Sheng Wu

BMC Bioinform., 2014

YTRP: a repository for yeast transcriptional regulatory pathways.

Tzu-Hsien Yang, Chung-Ching Wang, Yu-Chao Wang, Wei-Sheng Wu

Database J. Biol. Databases Curation, 2014

IMDE: An easy-to-use web server for missing data estimation.

Chia-Chun Chiu, Wei-Sheng Wu

Proceedings of the 11th IEEE International Conference on Control & Automation, 2014

2013

Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data.

Tzu-Hsien Yang, Wei-Sheng Wu

BMC Syst. Biol., 2013

Shrinkage regression-based methods for microarray missing value imputation.

Hsiuying Wang, Chia-Chun Chiu, Yi-Ching Wu, Wei-Sheng Wu

BMC Syst. Biol., 2013

Missing value imputation for microarray data: a comprehensive comparison study and a web tool.

Chia-Chun Chiu, Shih-Yao Chan, Chung-Ching Wang, Wei-Sheng Wu

BMC Syst. Biol., 2013

Fuzzy Logic Applications in Control Theory and Systems Biology.

Sendren Sheng-Dong Xu, Hao Ying, Pablo Carbonell, Ching-Hung Lee, Wei-Sheng Wu

Adv. Fuzzy Syst., 2013

2012

Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data.

Tzu-Hsien Yang, Wei-Sheng Wu

BMC Syst. Biol., 2012

2011

YPA: an integrated repository of promoter features in <i>Saccharomyces cerevisiae</i>.

Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu, Wei-Sheng Wu

Nucleic Acids Res., 2011

2008

Systematic identification of yeast cell cycle transcription factors using multiple data sources.

Wei-Sheng Wu, Wen-Hsiung Li

BMC Bioinform., 2008

2007

Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.

Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen

BMC Bioinform., 2007

2006

Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.

Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen

BMC Bioinform., 2006

Robust Filtering Circuit Design for Gene Networks under Intrinsic and Extrinsic Molecular Noises.

Bor-Sen Chen, Wei-Sheng Wu

Proceedings of the IEEE International Conference on Systems, 2006

2005

A new measure of the robustness of biochemical networks.

Bor-Sen Chen, Yu-Chao Wang, Wei-Sheng Wu, Wen-Hsiung Li

Bioinform., 2005