Zhiping Weng
Orcid: 0000-0002-3032-7966
According to our database1,
Zhiping Weng
authored at least 39 papers
between 2001 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome.
Nucleic Acids Res., January, 2023
2022
Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites.
Nucleic Acids Res., 2022
2021
High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.
Bioinform., 2021
2020
Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.
Bioinform., 2020
LogoJS: a Javascript package for creating sequence logos and embedding them in web applications.
Bioinform., 2020
2018
pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans.
Nucleic Acids Res., 2018
2017
Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.
BMC Bioinform., 2017
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
Bioinform., 2017
2016
Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data.
Briefings Bioinform., 2016
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
Bioinform., 2015
2014
Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor.
PLoS Comput. Biol., 2014
BMC Bioinform., 2014
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.
Bioinform., 2014
Evaluating template-based and template-free protein-protein complex structure prediction.
Briefings Bioinform., 2014
2013
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
Nucleic Acids Res., 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Unsupervised pattern discovery in human chromatin structure through genomic segmentation.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Briefings Bioinform., 2012
2011
Bioinform., 2011
2010
Proceedings of the Research in Computational Molecular Biology, 2010
2005
Transcriptional Regulatory Networks Activated by PI3K and ERK Transduced Growth Signals in Human Glioblastoma Cells.
J. Comput. Sci. Technol., 2005
Bioinform., 2005
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
Genome-wide decoding of hierarchical modular structure of transcriptional regulation by <i>cis</i>-element and expression clustering.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
2004
SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.
Nucleic Acids Res., 2004
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
Limited agreement among three global gene expression methods highlights the requirement for non-global validation.
Bioinform., 2004
2003
PromoSer: a large-scale mammalian promoter and transcription start site identification service.
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
BMC Bioinform., 2003
Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.
Bioinform., 2003
2002
HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues.
Nucleic Acids Res., 2002
2001