Xiaoqi Zheng

According to our database, Xiaoqi Zheng authored at least 24 papers between 2010 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

<i>E</i>-value: a superior alternative to <i>P</i>-value and its adjustments in DNA methylation studies.

Yifan Yang, Haoyuan Liu, Yi Liu, Liyuan Zhou, Xiaoqi Zheng, Rongxian Yue, David L. Mattson, Srividya Kidambi, Mingyu Liang, Pengyuan Liu, Xiaoqing Pan

Briefings Bioinform., July, 2023

TRAmHap: accurate prediction of transcriptional activity from DNA methylation haplotypes in bisulfite-sequencing data.

Siqi Gao, Hanwen Zhu, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Yi Ding, Yaochen Xu, Xiaoqi Zheng, Jiantao Shi

Briefings Bioinform., July, 2023

ExosomePurity: tumour purity deconvolution in serum exosomes based on miRNA signatures.

Tao Wu, Yao Dai, Yue Xu, Jie Zheng, Shuting Chen, Yinuo Zhang, Peng Tian, Xiaoqi Zheng, Haiyun Wang

Briefings Bioinform., May, 2023

2022

Secuer: Ultrafast, scalable and accurate clustering of single-cell RNA-seq data.

Nana Wei, Yating Nie, Lin Liu, Xiaoqi Zheng, Hua-Jun Wu

PLoS Comput. Biol., December, 2022

mHapTk: a comprehensive toolkit for the analysis of DNA methylation haplotypes.

Yi Ding, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Xiaoqi Zheng, Jiantao Shi

Bioinform., November, 2022

DriverRWH: discovering cancer driver genes by random walk on a gene mutation hypergraph.

Chenye Wang, Junhan Shi, Jiansheng Cai, Yusen Zhang, Xiaoqi Zheng, Naiqian Zhang

BMC Bioinform., 2022

Purification of tumor methylomes through residual decomposition.

Nana Wei, Yijing Zhu, Yating Nie, Shiyu Fan, Yuanchen Sun, Xiaoqi Zheng

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

TimNet: A text-image matching network integrating multi-stage feature extraction with multi-scale metrics.

Xiaoqi Zheng, Yingfan Tao, Ruikai Zhang, Wenming Yang, Qingmin Liao

Neurocomputing, 2021

The DNA methylation haplotype (mHap) format and mHapTools.

Zhiqiang Zhang, Yuhao Dan, Yaochen Xu, Jiarui Zhang, Xiaoqi Zheng, Jiantao Shi

Bioinform., 2021

2020

Deconvolution of heterogeneous tumor samples using partial reference signals.

Yufang Qin, Weiwei Zhang, Xiaoqiang Sun, Siwei Nan, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng

PLoS Comput. Biol., 2020

Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities.

Weiwei Zhang, Ziyi Li, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng

Bioinform., 2020

A comprehensive review of computational prediction of genome-wide features.

Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu

Briefings Bioinform., 2020

2019

Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model.

Dong Wei, Chuanying Liu, Xiaoqi Zheng, Yushuang Li

BMC Bioinform., 2019

2018

Universal informative CpG sites for inferring tumor purity from DNA methylation microarray data.

Haixia Dou, Yun Fang, Xiaoqi Zheng

J. Bioinform. Comput. Biol., 2018

Exploration on education model of international engineering competencies for undergraduate students through Project-Based Learning: A case study from China.

Qiudi Zhao, Xiaoqi Zheng, Siqi Zhou

Proceedings of the IEEE 10th International Conference on Engineering Education, 2018

2017

A machine-learning approach for predicting palmitoylation sites from integrated sequence-based features.

Liqi Li, Qifa Luo, Weidong Xiao, Jinhui Li, Shiwen Zhou, Yongsheng Li, Xiaoqi Zheng, Hua Yang

J. Bioinform. Comput. Biol., 2017

Accounting for tumor purity improves cancer subtype classification from DNA methylation data.

Weiwei Zhang, Hao Feng, Hao Wu, Xiaoqi Zheng

Bioinform., 2017

2015

Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model.

Naiqian Zhang, Haiyun Wang, Yun Fang, Jun Wang, Xiaoqi Zheng, Xiaole Shirley Liu

PLoS Comput. Biol., 2015

Predicting tumor purity from methylation microarray data.

Naiqian Zhang, Hua-Jun Wu, Weiwei Zhang, Jun Wang, Hao Wu, Xiaoqi Zheng

Bioinform., 2015

2014

A computational method of predicting regulatory interactions in Arabidopsis based on gene expression data and sequence information.

Xiaoqing Yu, Hongyun Gao, Xiaoqi Zheng, Chun Li, Jun Wang

Comput. Biol. Chem., 2014

Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM.

Liqi Li, Sanjiu Yu, Weidong Xiao, Yongsheng Li, Lan Huang, Xiaoqi Zheng, Shiwen Zhou, Hua Yang

BMC Bioinform., 2014

2013

Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles.

Jie Zhu, Yufang Qin, Taigang Liu, Jun Wang, Xiaoqi Zheng

BMC Bioinform., 2013

2011

Similarity analysis of DNA sequences based on the weighted pseudo-entropy.

Chun Li, Hong Ma, Yang Zhou, Xiaolei Wang, Xiaoqi Zheng

J. Comput. Chem., 2011

2010

An information-theoretic approach to the prediction of protein structural class.

Xiaoqi Zheng, Chun Li, Jun Wang

J. Comput. Chem., 2010