Yang Cao

According to our database1, Yang Cao authored at least 31 papers between 2003 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2019
Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle.
IEEE/ACM Trans. Comput. Biology Bioinform., 2019

Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application.
BMC Bioinform., 2019

A stochastic model of size control in the budding yeast cell cycle.
BMC Bioinform., 2019

2018
Analysis and Remedy of Negativity Problem in Hybrid Stochastic Simulation Algorithm and its Application: Extended Abstract.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics.
BMC Syst. Biol., 2017

Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.
CoRR, 2016

A Hybrid Stochastic Model of the Budding Yeast Cell Cycle Control Mechanism.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015
A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations.
Int. J. Parallel Program., 2015

Two-dimensional model of bipolar PopZ polymerization in <i>caulobacter crescentus</i>.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2013
Multigrid discretization method for PopZ polarization in Caulobacter cell cycle.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
The effect of unhealthy β-cells in synchronized insulin secretion.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2010
A modified uniformization method for the solution of the chemical master equation.
Comput. Math. Appl., 2010

Multistate modeling and simulation for regulatory networks.
Proceedings of the 2010 Winter Simulation Conference, 2010

Stiffness detection and reduction in discrete stochastic simulation of biochemical systems.
Proceedings of the 2010 Spring Simulation Multiconference, 2010

Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
Adaptive aggregation method for the Chemical Master Equation.
Int. J. Comput. Biol. Drug Des., 2009

Parallel solution of the chemical master equation.
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Stochastic cell cycle modeling for budding yeast.
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Radial Basis Function Collocation for the Chemical Master Equation.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008
Converting macromolecular regulatory models from deterministic to stochastic formulation.
Proceedings of the 2008 Spring Simulation Multiconference, 2008

Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Stochastic Simulation Algorithms for Chemical Reactions.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2006
Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems.
J. Comput. Phys., 2006

Sensitivity analysis of differential-algebraic equations and partial differential equations.
Comput. Chem. Eng., 2006

2005
Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems.
Multiscale Model. Simul., 2005

2004
A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method.
SIAM J. Sci. Comput., 2004

2003
Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution.
SIAM J. Sci. Comput., 2003

A Subspace Error Estimate for Linear Systems.
SIAM J. Matrix Anal. Appl., 2003


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