# Yang Cao

Affiliations:- Virginia Tech, Department of Computer Science, Blacksburg, VA, USA

According to our database

Collaborative distances:

^{1}, Yang Cao authored at least 42 papers between 2003 and 2021.Collaborative distances:

## Timeline

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## Bibliography

2021

A spatiotemporal model of polarity and spatial gradient establishment in <i>caulobacter crescentus</i>.

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020

Cell cycle control and environmental response by second messengers in Caulobacter crescentus.

BMC Bioinform., 2020

2019

Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle.

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application.

BMC Bioinform., 2019

BMC Bioinform., 2019

2018

Analysis and Remedy of Negativity Problem in Hybrid Stochastic Simulation Algorithm and its Application: Extended Abstract.

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Modelling Propagation of Public Opinions on Microblogging Big Data Using Sentiment Analysis and Compartmental Models.

Int. J. Semantic Web Inf. Syst., 2017

Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics.

BMC Syst. Biol., 2017

Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study.

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.

CoRR, 2016

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015

A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations.

Int. J. Parallel Program., 2015

Two-dimensional model of bipolar PopZ polymerization in <i>caulobacter crescentus</i>.

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Computer, 2014

2013

Proceedings of the 7th Workshop on Social Network Mining and Analysis, 2013

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

J. Comput. Sci., 2012

Evolutionary motifs for the Automated Discovery of Self-Organizing dimer Automata.

Adv. Complex Syst., 2012

Adv. Complex Syst., 2012

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.

Proceedings of the ACM International Conference on Bioinformatics, 2012

2010

A modified uniformization method for the solution of the chemical master equation.

Comput. Math. Appl., 2010

Proceedings of the 2010 Winter Simulation Conference, 2010

Stiffness detection and reduction in discrete stochastic simulation of biochemical systems.

Proceedings of the 2010 Spring Simulation Multiconference, 2010

Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009

Int. J. Comput. Biol. Drug Des., 2009

Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Radial Basis Function Collocation for the Chemical Master Equation.

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell.

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008

Converting macromolecular regulatory models from deterministic to stochastic formulation.

Proceedings of the 2008 Spring Simulation Multiconference, 2008

Reconstructing chemical reaction networks: data mining meets system identification.

Proceedings of the 14th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2008

Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation.

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Stochastic Simulation Algorithms for Chemical Reactions.

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2006

Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems.

J. Comput. Phys., 2006

Sensitivity analysis of differential-algebraic equations and partial differential equations.

Comput. Chem. Eng., 2006

2005

Multiscale Model. Simul., 2005

2004

A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method.

SIAM J. Sci. Comput., 2004

2003

Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution.

SIAM J. Sci. Comput., 2003

SIAM J. Matrix Anal. Appl., 2003