Yang Cao

According to our database, Yang Cao authored at least 43 papers between 2003 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2022

Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle.

Chunrui Xu, Henry Hollis, Michelle Dai, Xiangyu Yao, Layne T. Watson, Yang Cao, Minghan Chen

PLoS Comput. Biol., 2022

2021

A spatiotemporal model of polarity and spatial gradient establishment in <i>caulobacter crescentus</i>.

Chunrui Xu, Yang Cao

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020

Cell cycle control and environmental response by second messengers in Caulobacter crescentus.

Chunrui Xu, Bronson R. Weston, John J. Tyson, Yang Cao

BMC Bioinform., 2020

2019

Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle.

Minghan Chen, Brandon D. Amos, Layne T. Watson, John J. Tyson, Young Cao, Clifford A. Shaffer, Michael W. Trosset, Cihan Oguz, Gisella Kakoti

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application.

Minghan Chen, Yang Cao

BMC Bioinform., 2019

A stochastic model of size control in the budding yeast cell cycle.

Mansooreh Ahmadian, John J. Tyson, Yang Cao

BMC Bioinform., 2019

2018

Analysis and Remedy of Negativity Problem in Hybrid Stochastic Simulation Algorithm and its Application: Extended Abstract.

Minghan Chen, Yang Cao

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Modelling Propagation of Public Opinions on Microblogging Big Data Using Sentiment Analysis and Compartmental Models.

Youjia Fang, Xin Chen, Zheng Song, Tianzi Wang, Yang Cao

Int. J. Semantic Web Inf. Syst., 2017

Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics.

Minghan Chen, Fei Li, Shuo Wang, Young Cao

BMC Syst. Biol., 2017

Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study.

Mansooreh Ahmadian, Shuo Wang, John J. Tyson, Young Cao

Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016

Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.

Shuo Wang, Yang Pu, Layne T. Watson, Yang Cao

CoRR, 2016

A Hybrid Stochastic Model of the Budding Yeast Cell Cycle Control Mechanism.

Shuo Wang, Mansooreh Ahmadian, Minghan Chen, John J. Tyson, Young Cao

Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015

A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations.

Tae-Hyuk Ahn, Adrian Sandu, Layne T. Watson, Clifford A. Shaffer, Yang Cao, William T. Baumann

Int. J. Parallel Program., 2015

Two-dimensional model of bipolar PopZ polymerization in <i>caulobacter crescentus</i>.

Minghan Chen, Fei Li, Kartik Subramanian, John J. Tyson, Yang Cao

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Misinformation Propagation in the Age of Twitter.

Fang Jin, Wei Wang, Liang Zhao, Edward R. Dougherty, Yang Cao, Chang-Tien Lu, Naren Ramakrishnan

Computer, 2014

2013

Epidemiological modeling of news and rumors on Twitter.

Fang Jin, Edward R. Dougherty, Parang Saraf, Yang Cao, Naren Ramakrishnan

Proceedings of the 7th Workshop on Social Network Mining and Analysis, 2013

Multigrid discretization method for PopZ polarization in Caulobacter cell cycle.

Fei Li, Yang Cao

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Implementing modular adaptation of scientific software.

Pilsung Kang, Naresh K. C. Selvarasu, Naren Ramakrishnan, Calvin J. Ribbens, Danesh K. Tafti, Yang Cao, Srinidhi Varadarajan

J. Comput. Sci., 2012

Evolutionary motifs for the Automated Discovery of Self-Organizing dimer Automata.

Dustin Arendt, Yang Cao

Adv. Complex Syst., 2012

Effective GPU Acceleration of Large Scale, Asynchronous Simulations on Graphs.

Dustin Arendt, Yang Cao

Adv. Complex Syst., 2012

The effect of unhealthy β-cells in synchronized insulin secretion.

Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Approximation of a multi-scale model based on multiple site phosphorylation.

Zhen Liu, Yang Cao

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.

Shuo Wang, Yang Cao

Proceedings of the ACM International Conference on Bioinformatics, 2012

2010

A modified uniformization method for the solution of the chemical master equation.

Jingwei Zhang, Layne T. Watson, Yang Cao

Comput. Math. Appl., 2010

Multistate modeling and simulation for regulatory networks.

Zhen Liu, Umme Juka Mobassera, Clifford A. Shaffer, Layne T. Watson, Yang Cao

Proceedings of the 2010 Winter Simulation Conference, 2010

Stiffness detection and reduction in discrete stochastic simulation of biochemical systems.

Yang Pu, Layne T. Watson, Yang Cao

Proceedings of the 2010 Spring Simulation Multiconference, 2010

Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets.

Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao

Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009

Adaptive aggregation method for the Chemical Master Equation.

Jingwei Zhang, Layne T. Watson, Yang Cao

Int. J. Comput. Biol. Drug Des., 2009

Parallel solution of the chemical master equation.

Jingwei Zhang, Masha Sosonkina, Layne T. Watson, Yang Cao

Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Stochastic cell cycle modeling for budding yeast.

Tae-Hyuk Ahn, Pengyuan Wang, Layne T. Watson, Yang Cao, Clifford A. Shaffer, William T. Baumann

Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Modular implementation of adaptive decisions in stochastic simulations.

Pilsung Kang, Yang Cao, Naren Ramakrishnan, Calvin J. Ribbens, Srinidhi Varadarajan

Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Radial Basis Function Collocation for the Chemical Master Equation.

Jingwei Zhang, Layne T. Watson, Yang Cao

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell.

Yang Pu, Saangho Lee, Zhen Liu, David C. Samuels, Layne T. Watson, Yang Cao

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008

Converting macromolecular regulatory models from deterministic to stochastic formulation.

Pengyuan Wang, Ranjit Randhawa, Clifford A. Shaffer, Yang Cao, William T. Baumann

Proceedings of the 2008 Spring Simulation Multiconference, 2008

Reconstructing chemical reaction networks: data mining meets system identification.

Yong Ju Cho, Naren Ramakrishnan, Yang Cao

Proceedings of the 14th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2008

Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation.

Jingwei Zhang, Layne T. Watson, Masha Sosonkina, Yang Cao

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Stochastic Simulation Algorithms for Chemical Reactions.

Tae-Hyuk Ahn, Yang Cao, Layne T. Watson

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2006

Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems.

Yang Cao, Linda R. Petzold

J. Comput. Phys., 2006

Sensitivity analysis of differential-algebraic equations and partial differential equations.

Linda R. Petzold, Shengtai Li, Yang Cao, Radu Serban

Comput. Chem. Eng., 2006

2005

Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems.

Muruhan Rathinam, Linda R. Petzold, Yang Cao, Daniel T. Gillespie

Multiscale Model. Simul., 2005

2004

A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method.

Yang Cao, Linda R. Petzold

SIAM J. Sci. Comput., 2004

2003

Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution.

Yang Cao, Shengtai Li, Linda R. Petzold, Radu Serban

SIAM J. Sci. Comput., 2003

A Subspace Error Estimate for Linear Systems.

Yang Cao, Linda R. Petzold

SIAM J. Matrix Anal. Appl., 2003