Masha Sosonkina

According to our database1, Masha Sosonkina authored at least 110 papers between 1996 and 2019.

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Bibliography

2019
Improving efficiency of semi-direct møller-plesset second-order perturbation methods through oversubscription on multiple nodes.
Journal of Computational Chemistry, 2019

Effect of frequency scaling granularity on energy-saving strategies.
IJHPCA, 2019

DeapSECURE: Empowering Students for Data- and Compute-Intensive Research in Cybersecurity through Training.
Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

Comparing Frequency Scaling Efficacy on Different Memory Technologies.
Proceedings of the 2019 Spring Simulation Conference, 2019

Enhancing Asynchronous Linear Solvers Through Randomization.
Proceedings of the 2019 Spring Simulation Conference, 2019

2018
Comparisons of core and uncore frequency scaling modes in quantum chemistry application GAMESS.
Proceedings of the High Performance Computing Symposium, 2018

Modeling a task-based matrix-matrix multiplication application for resilience decision making.
Proceedings of the High Performance Computing Symposium, 2018

Convergence and resilience of the fine-grained parallel incomplete LU factorization for non-symmetric problems.
Proceedings of the High Performance Computing Symposium, 2018

Impacts of Three Soft-Fault Models on Hybrid Parallel Asynchronous Iterative Methods.
Proceedings of the 30th International Symposium on Computer Architecture and High Performance Computing, 2018

2017
Saving time and energy with oversubscription and semi-direct Møller-Plesset second order perturbation methods.
Journal of Computational Chemistry, 2017

Runtime power-aware energy-saving scheme for parallel applications.
IJHPSA, 2017

Evaluating effects of application based and automatic energy saving strategies on NWChem.
Proceedings of the 25th High Performance Computing Symposium, Virginia Beach, VA, USA, April 23, 2017

Fault tolerant variants of the fine-grained parallel incomplete LU factorization.
Proceedings of the 25th High Performance Computing Symposium, Virginia Beach, VA, USA, April 23, 2017

Applicability of the Empirical Mode Decomposition for Power Traces of Large-Scale Applications.
Proceedings of the Parallel Processing and Applied Mathematics, 2017

A Comparison of Soft-Fault Error Models in the Parallel Preconditioned Flexible GMRES.
Proceedings of the Parallel Processing and Applied Mathematics, 2017

Empirical Mode Decomposition for Modeling of Parallel Applications on Intel Xeon Phi Processors.
Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

2016
Joint frequency scaling of processor and DRAM.
The Journal of Supercomputing, 2016

Using the VBARMS method in parallel computing.
Parallel Computing, 2016

Efficacy of the SU(3) scheme for ab initio large-scale calculations beyond the lightest nuclei.
Computer Physics Communications, 2016

A Hybrid CPU/GPU Approach for the Parallel Algebraic Recursive Multilevel Solver pARMS.
Proceedings of the 18th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing, 2016

Power profiling and evaluating the effect of frequency scaling on NWChem.
Proceedings of the 24th High Performance Computing Symposium, 2016

Runtime Power Limiting of Parallel Applications on Intel Xeon Phi Processors.
Proceedings of the 4th International Workshop on Energy Efficient Supercomputing, 2016

2015
Remark on Algorithm 897: VTDIRECT95: Serial and Parallel Codes for the Global Optimization Algorithm DIRECT.
ACM Trans. Math. Softw., 2015

Performance analysis of distributed symmetric sparse matrix vector multiplication algorithm for multi-core architectures.
Concurrency and Computation: Practice and Experience, 2015

Strategies to hide communication for a classical molecular dynamics proxy application.
Proceedings of the Symposium on High Performance Computing, 2015

Modeling performance and energy for applications offloaded to Intel Xeon Phi.
Proceedings of the 2nd International Workshop on Hardware-Software Co-Design for High Performance Computing, 2015

Changing CPU Frequency in CoMD Proxy Application Offloaded to Intel Xeon Phi Co-processors.
Proceedings of the International Conference on Computational Science, 2015

Using Random Butterfly Transformations in parallel schur complement-based preconditioning.
Proceedings of the 2015 Federated Conference on Computer Science and Information Systems, 2015

2014
Automatic runtime frequency-scaling system for energy savings in parallel applications.
The Journal of Supercomputing, 2014

Graph Partitioning Using Matrix Values for Preconditioning Symmetric Positive Definite Systems.
SIAM J. Scientific Computing, 2014

VBARMS: A variable block algebraic recursive multilevel solver for sparse linear systems.
J. Computational Applied Mathematics, 2014

Energy efficient communications in quantum chemistry applications.
Computer Science - R&D, 2014

Performance and energy evaluation of CoMD on Intel Xeon Phi co-processors.
Proceedings of the 1st International Workshop on Hardware-Software Co-Design for High Performance Computing, 2014

An implementation of block conjugate gradient algorithm on CPU-GPU processors.
Proceedings of the 1st International Workshop on Hardware-Software Co-Design for High Performance Computing, 2014

Energy Evaluation for Applications with Different Thread Affinities on the Intel Xeon Phi.
Proceedings of the 26th IEEE International Symposium on Computer Architecture and High Performance Computing Workshop, 2014

2013
Adjusting process count on demand for petascale global optimization.
Parallel Computing, 2013

Energy saving strategies for parallel applications with point-to-point communication phases.
J. Parallel Distrib. Comput., 2013

Computational nuclear quantum many-body problem: The UNEDF project.
Computer Physics Communications, 2013

Achieving energy efficiency during collective communications.
Concurrency and Computation: Practice and Experience, 2013

Initial investigation of a scheme to use instantaneous CPU power consumption for energy savings format.
Proceedings of the 1st International Workshop on Energy Efficient Supercomputing, 2013

Variable Block Multilevel Iterative Solution of General Sparse Linear Systems.
Proceedings of the Parallel Processing and Applied Mathematics, 2013

Locality Optimization on a NUMA Architecture for Hybrid LU Factorization.
Proceedings of the Parallel Computing: Accelerating Computational Science and Engineering (CSE), 2013

Variable Block Algebraic Recursive Multilevel Solver (VBARMS) for Sparse Linear Systems.
Proceedings of the Parallel Computing: Accelerating Computational Science and Engineering (CSE), 2013

Leveraging GPUs in Ab Initio Nuclear Physics Calculations.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

2012
Fragment Molecular Orbital Method Adaptations for Heterogeneous Computing Platforms.
Proceedings of the International Conference on Computational Science, 2012

Effcient Shared-array Accesses in Ab Initio Nuclear Structure Calculations on Multicore Architectures.
Proceedings of the International Conference on Computational Science, 2012

Runtime Procedure for Energy Savings in Applications with Point-to-Point Communications.
Proceedings of the IEEE 24th International Symposium on Computer Architecture and High Performance Computing, 2012

Web Service andWorkflow Abstractions to Large Scale Nuclear Physics Calculations.
Proceedings of the 2012 IEEE Ninth International Conference on Services Computing, 2012

2011
A Multilevel Parallelism Support for Multi-Physics Coupling.
Proceedings of the International Conference on Computational Science, 2011

Asynchronous invocation of adaptations in electronic structure calculations.
Proceedings of the 2011 Spring Simulation Multi-conference, 2011

Communication with spawned processes.
Proceedings of the 2011 Spring Simulation Multi-conference, 2011

A data management system for ab-initio nuclear physics applications.
Proceedings of the 2011 Spring Simulation Multi-conference, 2011

Per-call Energy Saving Strategies in All-to-All Communications.
Proceedings of the Recent Advances in the Message Passing Interface, 2011

Dynamic Frequency Scaling and Energy Saving in Quantum Chemistry Applications.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

Dynamic Adaptations in ab-initio Nuclear Physics Calculations on Multicore Computer Architectures.
Proceedings of the 25th IEEE International Symposium on Parallel and Distributed Processing, 2011

A comparison of alternatives for communicating with spawned processes.
Proceedings of the 49th Annual Southeast Regional Conference, 2011

2010
Scaling of ab-initio nuclear physics calculations on multicore computer architectures.
Proceedings of the International Conference on Computational Science, 2010

Enhancing adaptive middleware for quantum chemistry applications with a database framework.
Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

A New Approach: Component-Based Multi-physics Coupling through CCA-LISI.
Proceedings of the Computational Science and Its Applications, 2010

Exploring Tuning Strategies for Quantum Chemistry Computations.
Proceedings of the Software Automatic Tuning, From Concepts to State-of-the-Art Results, 2010

2009
Algorithm 897: VTDIRECT95: Serial and parallel codes for the global optimization algorithm direct.
ACM Trans. Math. Softw., 2009

Performance Modeling and Analysis of a Massively Parallel Direct - Part 1.
IJHPCA, 2009

Performance Modeling and Analysis of a Massively Parallel Direct - Part 2.
IJHPCA, 2009

Parallel solution of the chemical master equation.
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

A HPC sparse solver interface for scalable multilevel methods.
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Development of high performance scientific components for interoperability of computing packages.
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009

Electronic Structure Calculations and Adaptation Scheme in Multi-core Computing Environments.
Proceedings of the Computational Science, 2009

Benefits of Parallel I/O in Ab Initio Nuclear Physics Calculations.
Proceedings of the Computational Science, 2009

2008
A component approach to collaborative scientific software development: Tools and techniques utilized by the Quantum Chemistry Science Application Partnership.
Scientific Programming, 2008

A partitioning algorithm for block-diagonal matrices with overlap.
Parallel Computing, 2008

Usability levels for sparse linear algebra components.
Concurrency and Computation: Practice and Experience, 2008

Design and implementation of a massively parallel version of DIRECT.
Comp. Opt. and Appl., 2008

Constructing a performance database for large-scale quantum chemistry packages.
Proceedings of the 2008 Spring Simulation Multiconference, 2008

Accelerating configuration interaction calculations for nuclear structure.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008

Integration of Ab Initio Nuclear Physics Calculations with Optimization Techniques.
Proceedings of the Computational Science, 2008

Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007
Component-based iterative methods for sparse linear systems.
Concurrency and Computation: Practice and Experience, 2007

Integrating Performance Tools with Large-Scale Scientific Software.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006
Algorithm 857: POLSYS_GLP - a parallel general linear product homotopy code for solving polynomial systems of equations.
ACM Trans. Math. Softw., 2006

EulFS : A Parallel CFD Code for the Simulation of Euler and Navier-Stokes Problems on Unstructured Grids.
Proceedings of the Applied Parallel Computing. State of the Art in Scientific Computing, 2006

IMAGE: an approach to building standards-based enterprise grids.
Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Dynamic Algorithm Selection in Parallel GAMESS Calculations.
Proceedings of the 2006 International Conference on Parallel Processing Workshops (ICPP Workshops 2006), 2006

Parallel Solvers for Flexible Approximation Schemes in Multiparticle Simulation.
Proceedings of the Computational Science, 2006

2005
Co-Scheduling Parallel Electronic Structure Calculations in SMP Cluster Environments.
Proceedings of the 2005 IEEE International Conference on Cluster Computing (CLUSTER 2005), September 26, 2005

2004
Using the parallel algebraic recursive multilevel solver in modern physical applications.
Future Generation Comp. Syst., 2004

Adapting Distributed Scientific Applications to Run-Time Network Conditions.
Proceedings of the Applied Parallel Computing, 2004

Runtime Software Techniques for Enhancing High-Performance Applications: An introduction.
Proceedings of the Applied Parallel Computing, 2004

Packet Probing as Network Load Detection for Scientific Applications at Run-Time.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

A Hierarchical Parallel Scheme for Global Parameter Estimation in Systems Biology.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

2003
pARMS: a parallel version of the algebraic recursive multilevel solver.
Numerical Lin. Alg. with Applic., 2003

A Numerical Study of Some Parallel Algebraic Preconditioners.
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003

2002
Scalability analysis of parallel GMRES implementations.
Parallel Algorithms Appl., 2002

A Framework for Integrating Network Information into Distributed Iterative Solution of Sparse Linear Systems.
Proceedings of the High Performance Computing for Computational Science, 2002

Parallel Iterative Methods in Modern Physical Applications.
Proceedings of the Computational Science - ICCS 2002, 2002

Dynamic Network Information Collectionfor Distributed Scientific Application Adaptation.
Proceedings of the High Performance Computing, 2002

2001
Parallelism in algebraic recursive solvers.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001

pARMS: A Package for Solving General Sparse Linear Systems on Parallel Computers.
Proceedings of the Parallel Processing and Applied Mathematics, 2001

Design of a Tool for Providing Dynamic Network Information to an Application.
Proceedings of the Parallel Computing Technologies, 2001

2000
Preconditioning strategies for linear systems arising in tire design.
Numerical Lin. Alg. with Applic., 2000

Runtime Adaptation of an Iterative Linear System Solution to Distributed Environments.
Proceedings of the Applied Parallel Computing, 2000

1999
Distributed Schur Complement Techniques for General Sparse Linear Systems.
SIAM J. Scientific Computing, 1999

Parallel Adaptive GMRES Implementations for Homotopy Methods.
SIAM Journal on Optimization, 1999

Enhanced Parallel Multicolor Preconditioning Techniques for Linear Systems.
Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999

Non-standard Parallel Solution Strategies for Distributed Sparse Linear Systems.
Proceedings of the Parallel Computation, 1999

1998
A new adaptive GMRES algorithm for achieving high accuracy.
Numerical Lin. Alg. with Applic., 1998

Solution of Distributed Sparse Linear Systems Using PSPARSLIB.
Proceedings of the Applied Parallel Computing, 1998

Scalable Parallel Implementations of the GMRES Algorithm via Householder Reflections.
Proceedings of the 1998 International Conference on Parallel Processing (ICPP '98), 1998

1997
Algorithm 777: HOMPACK90: A Suite of Fortran 90 Codes for Globally Convergent Homotopy Algorithms.
ACM Trans. Math. Softw., 1997

Scalability of Adaptive GMRES Algorithm.
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997

1996
Note on the End Game in Homotopy Zero Curve Tracking.
ACM Trans. Math. Softw., 1996


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