Linda R. Petzold
Orcid: 0000-0001-6251-6078Affiliations:
- University of California, Santa Barbara, USA
According to our database1,
Linda R. Petzold
authored at least 124 papers
between 1978 and 2024.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2011, "For contributions to computational science.".
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on zbmath.org
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on viaf.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
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on isni.org
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on dl.acm.org
On csauthors.net:
Bibliography
2024
2023
CoRR, 2023
Bayesian polynomial neural networks and polynomial neural ordinary differential equations.
CoRR, 2023
DNA-GPT: Divergent N-Gram Analysis for Training-Free Detection of GPT-Generated Text.
CoRR, 2023
CoRR, 2023
CoRR, 2023
Are Large Language Models Ready for Healthcare? A Comparative Study on Clinical Language Understanding.
Proceedings of the Machine Learning for Healthcare Conference, 2023
Improving Medical Predictions by Irregular Multimodal Electronic Health Records Modeling.
Proceedings of the International Conference on Machine Learning, 2023
Proceedings of the Findings of the Association for Computational Linguistics: ACL 2023, 2023
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023
2022
Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods.
PLoS Comput. Biol., 2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res., 2022
CoRR, 2022
Integrating Physiological Time Series and Clinical Notes with Transformer for Early Prediction of Sepsis.
CoRR, 2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
CoRR, 2022
Robust and integrative Bayesian neural networks for likelihood-free parameter inference.
Proceedings of the International Joint Conference on Neural Networks, 2022
Proceedings of the IEEE International Conference on Knowledge Graph, 2022
PcMSP: A Dataset for Scientific Action Graphs Extraction from Polycrystalline Materials Synthesis Procedure Text.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022
Predicting the need for blood transfusion in intensive care units with reinforcement learning.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022
2021
PLoS Comput. Biol., 2021
Multiple Organ Failure Prediction with Classifier-Guided Generative Adversarial Imputation Networks.
CoRR, 2021
Empirical Analysis of Machine Learning Configurations for Prediction of Multiple Organ Failure in Trauma Patients.
CoRR, 2021
CoRR, 2021
Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators.
BMC Bioinform., 2021
BMC Bioinform., 2021
Proceedings of the 2021 International Conference on Data Mining, 2021
Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
Regulation of CSF and Brain Tissue Sodium Levels by the Blood-CSF and Blood-Brain Barriers During Migraine.
Frontiers Comput. Neurosci., 2020
CoRR, 2020
Scalable Bayesian Functional Connectivity Inference for Multi-Electrode Array Recordings.
CoRR, 2020
Proceedings of the 20th International Conference on Data Mining Workshops, 2020
2019
Integrating machine learning and multiscale modeling - perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.
npj Digit. Medicine, 2019
A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems.
J. Comput. Phys., 2019
A Deep Learning Framework for Classification of in vitro Multi-Electrode Array Recordings.
Proceedings of the Advances in Data Mining, 2019
2018
Sparse Pathway-Induced Dynamic Network Biomarker Discovery for Early Warning Signal Detection in Complex Diseases.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
PLoS Comput. Biol., 2018
Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis.
PLoS Comput. Biol., 2018
Graph-based semi-supervised learning with genomic data integration using condition-responsive genes applied to phenotype classification.
J. Am. Medical Informatics Assoc., 2018
Identification of Disease States for Trauma Patients using Commonly Available Hospital Data.
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018
2017
Multivariate soft repulsive system identification for constructing rule-based classification systems: Application to trauma clinical data.
Neurocomputing, 2017
Understanding Coagulopathy using Multi-view Data in the Presence of Sub-Cohorts: A Hierarchical Subspace Approach.
Proceedings of the Machine Learning for Health Care Conference, 2017
Proceedings of the 33rd IEEE International Conference on Data Engineering, 2017
2016
MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME.
SIAM J. Sci. Comput., 2016
PLoS Comput. Biol., 2016
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
PLoS Comput. Biol., 2016
BMC Medical Informatics Decis. Mak., 2016
High-performance simulation of fracture in idealized 'brick and mortar' composites using adaptive Monte Carlo minimization on the GPU.
Int. J. High Perform. Comput. Appl., 2016
What Drives Consumer Choices? Mining Aspects and Opinions on Large Scale Review Data Using Distributed Representation of Words.
Proceedings of the IEEE International Conference on Data Mining Workshops, 2016
Proceedings of the New Codebreakers, 2016
2015
Bioinform., 2015
Proceedings of the Social Informatics - 7th International Conference, 2015
Proceedings of the 2015 IEEE International Conference on Data Mining, 2015
Direct higher order fuzzy rule-based classification system: Application in mortality prediction.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
PLoS Comput. Biol., 2014
Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting.
J. Comput. Phys., 2014
The time dependent propensity function for acceleration of spatial stochastic simulation of reaction-diffusion systems.
J. Comput. Phys., 2014
An exact and efficient first passage time algorithm for reaction-diffusion processes on a 2D-lattice.
J. Comput. Phys., 2014
Proceedings of the Social Informatics, 2014
Proceedings of the International Conference on High Performance Computing & Simulation, 2014
2013
PLoS Comput. Biol., 2013
Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder.
BMC Syst. Biol., 2013
Proceedings of the Advances in Social Networks Analysis and Mining 2013, 2013
2012
Language and Runtime Support for Automatic Configuration and Deployment of Scientific Computing Software over Cloud Fabrics.
J. Grid Comput., 2012
Core module biomarker identification with network exploration for breast cancer metastasis.
BMC Bioinform., 2012
Accelerated maximum likelihood parameter estimation for stochastic biochemical systems.
BMC Bioinform., 2012
Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012
Proceedings of the 12th IEEE/ACM International Symposium on Cluster, 2012
Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
2011
StochKit2: software for discrete stochastic simulation of biochemical systems with events.
Bioinform., 2011
2010
An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies.
J. Comput. Phys., 2010
Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit.
Int. J. High Perform. Comput. Appl., 2010
Confidence from uncertainty - A multi-target drug screening method from robust control theory.
BMC Syst. Biol., 2010
2009
J. Comput. Phys., 2009
Parallel simulation for a fish schooling model on a general-purpose graphics processing unit.
Concurr. Comput. Pract. Exp., 2009
2008
Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network.
IEEE Trans. Autom. Control., 2008
A stabilized explicit Lagrange multiplier based domain decomposition method for parabolic problems.
J. Comput. Phys., 2008
A hybrid multiscale kinetic Monte Carlo method for simulation of copper electrodeposition.
J. Comput. Phys., 2008
2007
The Effect of Problem Perturbations on Nonlinear Dynamical Systems and their Reduced-Order Models.
SIAM J. Sci. Comput., 2007
An efficient, scalable numerical algorithm for the simulation of electrochemical systems on irregular domains.
J. Comput. Phys., 2007
2006
Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems.
J. Comput. Phys., 2006
Sensitivity analysis of differential-algebraic equations and partial differential equations.
Comput. Chem. Eng., 2006
2005
SIAM J. Numer. Anal., 2005
Multiscale Model. Simul., 2005
2004
A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method.
SIAM J. Sci. Comput., 2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
2003
Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution.
SIAM J. Sci. Comput., 2003
Deriving User Interface Requirements from Densely Interleaved Scientific Computing Applications.
Proceedings of the 18th IEEE International Conference on Automated Software Engineering (ASE 2003), 2003
Proceedings of the 42nd IEEE Conference on Decision and Control, 2003
2002
Efficient Computation of Sensitivities for Ordinary Differential Equation Boundary Value Problems.
SIAM J. Numer. Anal., 2002
Dynamic Iteration Using Reduced Order Models: A Method for Simulation of Large Scale Modular Systems.
SIAM J. Numer. Anal., 2002
2001
Constraint Partitioning for Stability in Path-Constrained Dynamic Optimization Problems.
SIAM J. Sci. Comput., 2001
2000
An iterative method for simulation of large scale modular systems using reduced order models.
Proceedings of the 39th IEEE Conference on Decision and Control, 2000
1999
Concurr. Pract. Exp., 1999
1998
An Efficient Newton-Type Iteration for the Numerical Solution of Highly Oscillatory Constrained Multibody Dynamic Systems.
SIAM J. Sci. Comput., 1998
SIAM J. Sci. Comput., 1998
SIAM J. Sci. Comput., 1998
Computer methods for ordinary differential equations and differential-algebraic equations.
SIAM, ISBN: 978-0-89871-412-8, 1998
1997
Regularization of Higher-Index Differential-Algebraic Equations with Rank-Deficient Constraints.
SIAM J. Sci. Comput., 1997
1996
Numerical solution of initial-value problems in differential-algebraic equations.
Classics in applied mathematics 14, SIAM, ISBN: 978-089871-353-4, 1996
1995
Concurr. Pract. Exp., 1995
1994
SIAM J. Sci. Comput., 1994
1993
SIAM J. Sci. Comput., 1993
1992
SIAM J. Sci. Comput., 1992
1978
PhD thesis, 1978