Linda R. Petzold

  • University of California, Santa Barbara, USA

According to our database1, Linda R. Petzold authored at least 90 papers between 1992 and 2021.

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PhD thesis 


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Multiple Organ Failure Prediction with Classifier-Guided Generative Adversarial Imputation Networks.
CoRR, 2021

Empirical Analysis of Machine Learning Configurations for Prediction of Multiple Organ Failure in Trauma Patients.
CoRR, 2021

BERTSurv: BERT-Based Survival Models for Predicting Outcomes of Trauma Patients.
CoRR, 2021

Robust and integrative Bayesian neural networks for likelihood-free parameter inference.
CoRR, 2021

Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators.
BMC Bioinform., 2021

Associations of longitudinal D-Dimer and Factor II on early trauma survival risk.
BMC Bioinform., 2021

Regulation of CSF and Brain Tissue Sodium Levels by the Blood-CSF and Blood-Brain Barriers During Migraine.
Frontiers Comput. Neurosci., 2020

Model Optimization for Deep Space Exploration via Simulators and Deep Learning.
CoRR, 2020

Scalable Bayesian Functional Connectivity Inference for Multi-Electrode Array Recordings.
CoRR, 2020

Advances in Deep Space Exploration via Simulators & Deep Learning.
CoRR, 2020

How Much Does It Hurt: A Deep Learning Framework for Chronic Pain Score Assessment.
Proceedings of the 20th International Conference on Data Mining Workshops, 2020

A Minimum Free Energy Model of Motor Learning.
Neural Comput., 2019

A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems.
J. Comput. Phys., 2019

A Deep Learning Framework for Classification of in vitro Multi-Electrode Array Recordings.
Proceedings of the Advances in Data Mining, 2019

Sparse Pathway-Induced Dynamic Network Biomarker Discovery for Early Warning Signal Detection in Complex Diseases.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

The effect of cell geometry on polarization in budding yeast.
PLoS Comput. Biol., 2018

Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis.
PLoS Comput. Biol., 2018

Graph-based semi-supervised learning with genomic data integration using condition-responsive genes applied to phenotype classification.
J. Am. Medical Informatics Assoc., 2018

Identification of Disease States for Trauma Patients using Commonly Available Hospital Data.
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

Multivariate soft repulsive system identification for constructing rule-based classification systems: Application to trauma clinical data.
Neurocomputing, 2017

Understanding Coagulopathy using Multi-view Data in the Presence of Sub-Cohorts: A Hierarchical Subspace Approach.
Proceedings of the Machine Learning for Health Care Conference, 2017

Survival Topic Models for Predicting Outcomes for Trauma Patients.
Proceedings of the 33rd IEEE International Conference on Data Engineering, 2017

MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME.
SIAM J. Sci. Comput., 2016

Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.
PLoS Comput. Biol., 2016

Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
PLoS Comput. Biol., 2016

Identification of disease states associated with coagulopathy in trauma.
BMC Medical Informatics Decis. Mak., 2016

High-performance simulation of fracture in idealized 'brick and mortar' composites using adaptive Monte Carlo minimization on the GPU.
Int. J. High Perform. Comput. Appl., 2016

Research and Education in Computational Science and Engineering.
CoRR, 2016

Multi-View Treelet Transform.
CoRR, 2016

What Drives Consumer Choices? Mining Aspects and Opinions on Large Scale Review Data Using Distributed Representation of Words.
Proceedings of the IEEE International Conference on Data Mining Workshops, 2016

Bitsliced High-Performance AES-ECB on GPUs.
Proceedings of the New Codebreakers, 2016

Inferring single-cell gene expression mechanisms using stochastic simulation.
Bioinform., 2015

Detecting Opinions in a Temporally Evolving Conversation on Twitter.
Proceedings of the Social Informatics - 7th International Conference, 2015

A Cure Time Model for Joint Prediction of Outcome and Time-to-Outcome.
Proceedings of the 2015 IEEE International Conference on Data Mining, 2015

Direct higher order fuzzy rule-based classification system: Application in mortality prediction.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

BiP Clustering Facilitates Protein Folding in the Endoplasmic Reticulum.
PLoS Comput. Biol., 2014

Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting.
J. Comput. Phys., 2014

The time dependent propensity function for acceleration of spatial stochastic simulation of reaction-diffusion systems.
J. Comput. Phys., 2014

An exact and efficient first passage time algorithm for reaction-diffusion processes on a 2D-lattice.
J. Comput. Phys., 2014

Probabilistic User-Level Opinion Detection on Online Social Networks.
Proceedings of the Social Informatics, 2014

Automatic and portable cloud deployment for scientific simulations.
Proceedings of the International Conference on High Performance Computing & Simulation, 2014

Spatial Stochastic Dynamics Enable Robust Cell Polarization.
PLoS Comput. Biol., 2013

Time dependent solution for acceleration of tau-leaping.
J. Comput. Phys., 2013

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder.
BMC Syst. Biol., 2013

I act, therefore I judge: network sentiment dynamics based on user activity change.
Proceedings of the Advances in Social Networks Analysis and Mining 2013, 2013

Language and Runtime Support for Automatic Configuration and Deployment of Scientific Computing Software over Cloud Fabrics.
J. Grid Comput., 2012

Core module biomarker identification with network exploration for breast cancer metastasis.
BMC Bioinform., 2012

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems.
BMC Bioinform., 2012

Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012

Reducing Complexity in Management of eScience Computations.
Proceedings of the 12th IEEE/ACM International Symposium on Cluster, 2012

Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

Undergraduate Computational Science and Engineering Education.
SIAM Rev., 2011

StochKit2: software for discrete stochastic simulation of biochemical systems with events.
Bioinform., 2011

An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies.
J. Comput. Phys., 2010

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit.
Int. J. High Perform. Comput. Appl., 2010

Confidence from uncertainty - A multi-target drug screening method from robust control theory.
BMC Syst. Biol., 2010

Effect of excluded volume on 2D discrete stochastic chemical kinetics.
J. Comput. Phys., 2009

Parallel simulation for a fish schooling model on a general-purpose graphics processing unit.
Concurr. Comput. Pract. Exp., 2009

Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network.
IEEE Trans. Autom. Control., 2008

Differential-algebraic equations.
Scholarpedia, 2008

A stabilized explicit Lagrange multiplier based domain decomposition method for parabolic problems.
J. Comput. Phys., 2008

A hybrid multiscale kinetic Monte Carlo method for simulation of copper electrodeposition.
J. Comput. Phys., 2008

The Effect of Problem Perturbations on Nonlinear Dynamical Systems and their Reduced-Order Models.
SIAM J. Sci. Comput., 2007

An efficient, scalable numerical algorithm for the simulation of electrochemical systems on irregular domains.
J. Comput. Phys., 2007

Runge-Kutta-Chebyshev projection method.
J. Comput. Phys., 2006

Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems.
J. Comput. Phys., 2006

Sensitivity analysis of differential-algebraic equations and partial differential equations.
Comput. Chem. Eng., 2006

Error Estimation for Reduced-Order Models of Dynamical Systems.
SIAM J. Numer. Anal., 2005

Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems.
Multiscale Model. Simul., 2005

A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method.
SIAM J. Sci. Comput., 2004

Parallel Simulation of Fluid Slip in a Microchannel.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution.
SIAM J. Sci. Comput., 2003

A New Look at Proper Orthogonal Decomposition.
SIAM J. Numer. Anal., 2003

A Subspace Error Estimate for Linear Systems.
SIAM J. Matrix Anal. Appl., 2003

Deriving User Interface Requirements from Densely Interleaved Scientific Computing Applications.
Proceedings of the 18th IEEE International Conference on Automated Software Engineering (ASE 2003), 2003

Efficient Computation of Sensitivities for Ordinary Differential Equation Boundary Value Problems.
SIAM J. Numer. Anal., 2002

Dynamic Iteration Using Reduced Order Models: A Method for Simulation of Large Scale Modular Systems.
SIAM J. Numer. Anal., 2002

Halo orbit mission correction maneuvers using optimal control.
Autom., 2002

Constraint Partitioning for Stability in Path-Constrained Dynamic Optimization Problems.
SIAM J. Sci. Comput., 2001

Parallel sensitivity analysis for DAEs with many parameters.
Concurr. Pract. Exp., 1999

An Efficient Newton-Type Iteration for the Numerical Solution of Highly Oscillatory Constrained Multibody Dynamic Systems.
SIAM J. Sci. Comput., 1998

Stability of Moving Mesh Systems of Partial Differential Equations.
SIAM J. Sci. Comput., 1998

Consistent Initial Condition Calculation for Differential-Algebraic Systems.
SIAM J. Sci. Comput., 1998

Computer methods for ordinary differential equations and differential-algebraic equations.
SIAM, ISBN: 978-0-89871-412-8, 1998

Regularization of Higher-Index Differential-Algebraic Equations with Rank-Deficient Constraints.
SIAM J. Sci. Comput., 1997

Numerical solution of initial-value problems in differential-algebraic equations.
Classics in applied mathematics 14, SIAM, ISBN: 978-089871-353-4, 1996

Parallel solution of large-scale differential-algebraic systems.
Concurr. Pract. Exp., 1995

Using Krylov Methods in the Solution of Large-Scale Differential-Algebraic Systems.
SIAM J. Sci. Comput., 1994

Stability of Computational Methods for Constrained Dynamics Systems.
SIAM J. Sci. Comput., 1993

Special Issue on Iterative Methods in Numerical Linear Algebra.
SIAM J. Sci. Comput., 1992