Linda R. Petzold

According to our database1, Linda R. Petzold
  • authored at least 77 papers between 1992 and 2018.
  • has a "Dijkstra number"2 of four.

Awards

ACM Fellow

ACM Fellow 2011, "For contributions to computational science.".

Timeline

Legend:

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In proceedings 
Article 
PhD thesis 
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Links

Homepages:

On csauthors.net:

Bibliography

2018
Sparse Pathway-Induced Dynamic Network Biomarker Discovery for Early Warning Signal Detection in Complex Diseases.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

The effect of cell geometry on polarization in budding yeast.
PLoS Computational Biology, 2018

Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis.
PLoS Computational Biology, 2018

Graph-based semi-supervised learning with genomic data integration using condition-responsive genes applied to phenotype classification.
JAMIA, 2018

2017
Multivariate soft repulsive system identification for constructing rule-based classification systems: Application to trauma clinical data.
Neurocomputing, 2017

Understanding Coagulopathy using Multi-view Data in the Presence of Sub-Cohorts: A Hierarchical Subspace Approach.
Proceedings of the Machine Learning for Health Care, 2017

Survival Topic Models for Predicting Outcomes for Trauma Patients.
Proceedings of the 33rd IEEE International Conference on Data Engineering, 2017

2016
MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME.
SIAM J. Scientific Computing, 2016

Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.
PLoS Computational Biology, 2016

Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
PLoS Computational Biology, 2016

Identification of disease states associated with coagulopathy in trauma.
BMC Med. Inf. & Decision Making, 2016

High-performance simulation of fracture in idealized 'brick and mortar' composites using adaptive Monte Carlo minimization on the GPU.
IJHPCA, 2016

Research and Education in Computational Science and Engineering.
CoRR, 2016

Multi-View Treelet Transform.
CoRR, 2016

What Drives Consumer Choices? Mining Aspects and Opinions on Large Scale Review Data Using Distributed Representation of Words.
Proceedings of the IEEE International Conference on Data Mining Workshops, 2016

Bitsliced High-Performance AES-ECB on GPUs.
Proceedings of the New Codebreakers, 2016

2015
MOLNs: A cloud platform for interactive, reproducible and scalable spatial stochastic computational experiments in systems biology using PyURDME.
CoRR, 2015

Inferring single-cell gene expression mechanisms using stochastic simulation.
Bioinformatics, 2015

Detecting Opinions in a Temporally Evolving Conversation on Twitter.
Proceedings of the Social Informatics - 7th International Conference, 2015

A Cure Time Model for Joint Prediction of Outcome and Time-to-Outcome.
Proceedings of the 2015 IEEE International Conference on Data Mining, 2015

Direct higher order fuzzy rule-based classification system: Application in mortality prediction.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
BiP Clustering Facilitates Protein Folding in the Endoplasmic Reticulum.
PLoS Computational Biology, 2014

Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting.
J. Comput. Physics, 2014

The time dependent propensity function for acceleration of spatial stochastic simulation of reaction-diffusion systems.
J. Comput. Physics, 2014

An exact and efficient first passage time algorithm for reaction-diffusion processes on a 2D-lattice.
J. Comput. Physics, 2014

Probabilistic User-Level Opinion Detection on Online Social Networks.
Proceedings of the Social Informatics, 2014

Automatic and portable cloud deployment for scientific simulations.
Proceedings of the International Conference on High Performance Computing & Simulation, 2014

2013
Spatial Stochastic Dynamics Enable Robust Cell Polarization.
PLoS Computational Biology, 2013

Time dependent solution for acceleration of tau-leaping.
J. Comput. Physics, 2013

Local error estimates for adaptive simulation of the Reaction-Diffusion Master Equation via operator splitting
CoRR, 2013

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder.
BMC Systems Biology, 2013

I act, therefore I judge: network sentiment dynamics based on user activity change.
Proceedings of the Advances in Social Networks Analysis and Mining 2013, 2013

2012
Language and Runtime Support for Automatic Configuration and Deployment of Scientific Computing Software over Cloud Fabrics.
J. Grid Comput., 2012

Core module biomarker identification with network exploration for breast cancer metastasis.
BMC Bioinformatics, 2012

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems.
BMC Bioinformatics, 2012

Stochastic Simulation Service: Towards an Integrated Development Environment for Modeling and Simulation of Stochastic Biochemical Systems.
Proceedings of the 2012 SC Companion: High Performance Computing, 2012

Reducing Complexity in Management of eScience Computations.
Proceedings of the 12th IEEE/ACM International Symposium on Cluster, 2012

Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011
Undergraduate Computational Science and Engineering Education.
SIAM Review, 2011

StochKit2: software for discrete stochastic simulation of biochemical systems with events.
Bioinformatics, 2011

2010
An algorithm for simulation of electrochemical systems with surface-bulk coupling strategies.
J. Comput. Physics, 2010

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit.
IJHPCA, 2010

Confidence from uncertainty - A multi-target drug screening method from robust control theory.
BMC Systems Biology, 2010

2009
Effect of excluded volume on 2D discrete stochastic chemical kinetics.
J. Comput. Physics, 2009

Parallel simulation for a fish schooling model on a general-purpose graphics processing unit.
Concurrency and Computation: Practice and Experience, 2009

2008
Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network.
IEEE Trans. Automat. Contr., 2008

Differential-algebraic equations.
Scholarpedia, 2008

A stabilized explicit Lagrange multiplier based domain decomposition method for parabolic problems.
J. Comput. Physics, 2008

A hybrid multiscale kinetic Monte Carlo method for simulation of copper electrodeposition.
J. Comput. Physics, 2008

2007
The Effect of Problem Perturbations on Nonlinear Dynamical Systems and their Reduced-Order Models.
SIAM J. Scientific Computing, 2007

Error Estimation for Reduced-Order Models of Dynamical Systems.
SIAM Review, 2007

An efficient, scalable numerical algorithm for the simulation of electrochemical systems on irregular domains.
J. Comput. Physics, 2007

2006
Runge-Kutta-Chebyshev projection method.
J. Comput. Physics, 2006

Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems.
J. Comput. Physics, 2006

Sensitivity analysis of differential-algebraic equations and partial differential equations.
Computers & Chemical Engineering, 2006

2005
Error Estimation for Reduced-Order Models of Dynamical Systems.
SIAM J. Numerical Analysis, 2005

Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems.
Multiscale Modeling & Simulation, 2005

2004
A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method.
SIAM J. Scientific Computing, 2004

Parallel Simulation of Fluid Slip in a Microchannel.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

2003
Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution.
SIAM J. Scientific Computing, 2003

A New Look at Proper Orthogonal Decomposition.
SIAM J. Numerical Analysis, 2003

A Subspace Error Estimate for Linear Systems.
SIAM J. Matrix Analysis Applications, 2003

Deriving User Interface Requirements from Densely Interleaved Scientific Computing Applications.
Proceedings of the 18th IEEE International Conference on Automated Software Engineering (ASE 2003), 2003

2002
Efficient Computation of Sensitivities for Ordinary Differential Equation Boundary Value Problems.
SIAM J. Numerical Analysis, 2002

Dynamic Iteration Using Reduced Order Models: A Method for Simulation of Large Scale Modular Systems.
SIAM J. Numerical Analysis, 2002

Halo orbit mission correction maneuvers using optimal control.
Automatica, 2002

2001
Constraint Partitioning for Stability in Path-Constrained Dynamic Optimization Problems.
SIAM J. Scientific Computing, 2001

1999
Parallel sensitivity analysis for DAEs with many parameters.
Concurrency - Practice and Experience, 1999

1998
An Efficient Newton-Type Iteration for the Numerical Solution of Highly Oscillatory Constrained Multibody Dynamic Systems.
SIAM J. Scientific Computing, 1998

Stability of Moving Mesh Systems of Partial Differential Equations.
SIAM J. Scientific Computing, 1998

Consistent Initial Condition Calculation for Differential-Algebraic Systems.
SIAM J. Scientific Computing, 1998

Computer methods for ordinary differential equations and differential-algebraic equations.
SIAM, ISBN: 978-0-89871-412-8, 1998

1997
Regularization of Higher-Index Differential-Algebraic Equations with Rank-Deficient Constraints.
SIAM J. Scientific Computing, 1997

1995
Parallel solution of large-scale differential-algebraic systems.
Concurrency - Practice and Experience, 1995

1994
Using Krylov Methods in the Solution of Large-Scale Differential-Algebraic Systems.
SIAM J. Scientific Computing, 1994

1993
Stability of Computational Methods for Constrained Dynamics Systems.
SIAM J. Scientific Computing, 1993

1992
Special Issue on Iterative Methods in Numerical Linear Algebra.
SIAM J. Scientific Computing, 1992


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