Yoshihiro Shibuya

According to our database, Yoshihiro Shibuya authored at least 10 papers between 2019 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Processing-in-memory for genomics workloads.

William Andrew Simon, Leonid Yavits, Konstantina Koliogeorgi, Yann Falevoz, Yoshihiro Shibuya, Dominique Lavenier, Irem Boybat, Klea Zambaku, Berkan Sahin, Mohammad Sadrosadati, Onur Mutlu, Abu Sebastian, Rayan Chikhi, The BioPIM Consortium, Can Alkan

CoRR, June, 2025

Hyper-k-mers: Efficient Streaming k-mers Representation.

Igor Martayan, Lucas Robidou, Yoshihiro Shibuya, Antoine Limasset

Proceedings of the Research in Computational Molecular Biology, 2025

2023

Locality-preserving minimal perfect hashing of <i>k</i>-mers.

Giulio Ermanno Pibiri, Yoshihiro Shibuya, Antoine Limasset

Bioinform., 2023

2022

Sketching data structures for alignment-free analysis of genomic sequences. (Esquissage de structures de données pour l'analyse de séquences génomiques sans alignements).

Yoshihiro Shibuya

PhD thesis, 2022

Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k-Mer Annotation.

Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov

J. Comput. Biol., 2022

Locality-Preserving Minimal Perfect Hashing of k-mers.

Giulio Ermanno Pibiri, Yoshihiro Shibuya, Antoine Limasset

CoRR, 2022

Efficient Reconciliation of Genomic Datasets of High Similarity.

Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov

Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022

2021

Space-Efficient Representation of Genomic k-Mer Count Tables.

Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov

Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021

2019

Better quality score compression through sequence-based quality smoothing.

Yoshihiro Shibuya, Matteo Comin

BMC Bioinform., 2019

Indexing k-mers in Linear-space for Quality Value Compression.

Yoshihiro Shibuya, Matteo Comin

Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2019), 2019