Yuguang Mu

According to our database, Yuguang Mu authored at least 25 papers between 2009 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

zERExtractor: An Automated Platform for Enzyme-Catalyzed Reaction Data Extraction from Scientific Literature.

Rui Zhou, Haohui Ma, Tianle Xin, Qiucheng Miao, Lixin Zou, Qiuyue Hu, Hongxi Cheng, Jingjing Guo, Yuguang Mu, Sheng Wang, Guoqing Zhang, Yanjie Wei, Liangzhen Zheng

J. Chem. Inf. Model., 2026

Unveiling the Activation Mechanism of Glucagon-Like Peptide-1 Receptor by an Ago-Allosteric Modulator via Molecular Dynamics Simulations.

Yue Chen, Junhao Li, Lucie Delemotte, Yuguang Mu

J. Chem. Inf. Model., 2026

Could statistical potential models achieve comparable or better performance than deep learning models?

Zhihao Wang, Sheng Wang, Jingjing Guo, Yuguang Mu, Xiangdong Liu, Liangzhen Zheng, Weifeng Li

Briefings Bioinform., 2026

2025

Evaluations of the Perturbation Resistance of the Deep-Learning-Based Ligand Conformation Optimization Algorithm.

Minghui Xin, Zechen Wang, Zhihao Wang, Yuanyuan Qu, Yanmei Yang, Yong-Qiang Li, Ming-Wen Zhao, Liangzhen Zheng, Yuguang Mu, Weifeng Li

J. Chem. Inf. Model., 2025

BridgeNet: a high-efficiency framework integrating sequence and structure for protein and enzyme function prediction.

Yilin Ye, Hongliang Duan, Yuguang Mu, Lei Wu, Jingjing Guo

Briefings Bioinform., 2025

Enhancing Bioactivity Prediction via Spatial Emptiness Representation of Protein-ligand Complex and Union of Multiple Pockets.

Zhiyuan Zhou, Yueming Yin, Yiming Yang, Yuguang Mu, Hoi-Yeung Li, Adams Wai-Kin Kong

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2025, 2025

2024

Advancing Bioactivity Prediction Through Molecular Docking and Self-Attention.

Yueming Yin, Hilbert Yuen In Lam, Yuguang Mu, Hoi-Yeung Li, Adams Wai-Kin Kong

IEEE J. Biomed. Health Informatics, December, 2024

Protein language models are performant in structure-free virtual screening.

Hilbert Yuen In Lam, Jia Sheng Guan, Xing Er Ong, Robbe Pincket, Yuguang Mu

Briefings Bioinform., November, 2024

A new paradigm for applying deep learning to protein-ligand interaction prediction.

Zechen Wang, Sheng Wang, Yangyang Li, Jingjing Guo, Yanjie Wei, Yuguang Mu, Liangzhen Zheng, Weifeng Li

Briefings Bioinform., May, 2024

RmsdXNA: RMSD prediction of nucleic acid-ligand docking poses using machine-learning method.

Lai Heng Tan, Chee Keong Kwoh, Yuguang Mu

Briefings Bioinform., May, 2024

Systematic benchmarking of deep-learning methods for tertiary RNA structure prediction.

Akash Bahai, Chee Keong Kwoh, Yuguang Mu, Yinghui Li

PLoS Comput. Biol., 2024

ProAffinity-GNN: A Novel Approach to Structure-Based Protein-Protein Binding Affinity Prediction via a Curated Data Set and Graph Neural Networks.

Zhiyuan Zhou, Yueming Yin, Hao Han, Yiping Jia, Jun Hong Koh, Adams Wai-Kin Kong, Yuguang Mu

J. Chem. Inf. Model., 2024

Pharmacophore-constrained de novo drug design with diffusion bridge.

Conghao Wang, Yuguang Mu, Jagath C. Rajapakse

CoRR, 2024

Protein solubility prediction through structure and sequence-based embeddings.

Shikhar Saxena, Yuguang Mu

Commun. Inf. Syst., 2024

OpenDock: a pytorch-based open-source framework for protein-ligand docking and modelling.

Qiuyue Hu, Zechen Wang, Jintao Meng, Weifeng Li, Jingjing Guo, Yuguang Mu, Sheng Wang, Liangzhen Zheng, Yanjie Wei

Bioinform., 2024

2023

Application of variational graph encoders as an effective generalist algorithm in computer-aided drug design.

Hilbert Yuen In Lam, Robbe Pincket, Hao Han, Xing Er Ong, Zechen Wang, Jamie Hinks, Yanjie Wei, Weifeng Li, Liangzhen Zheng, Yuguang Mu

Nat. Mac. Intell., July, 2023

A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function.

Zechen Wang, Liangzhen Zheng, Sheng Wang, Mingzhi Lin, Zhihao Wang, Adams Wai-Kin Kong, Yuguang Mu, Yanjie Wei, Weifeng Li

Briefings Bioinform., January, 2023

2022

Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term.

Liangzhen Zheng, Jintao Meng, Kai Jiang, Haidong Lan, Zechen Wang, Mingzhi Lin, Weifeng Li, Hongwei Guo, Yanjie Wei, Yuguang Mu

Briefings Bioinform., 2022

2019

Molecular Dynamics and Simulation.

Liangzhen Zheng, Amr Alhossary, Chee-Keong Kwoh, Yuguang Mu

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

The Necessity of d-Thr in the New Antibiotic Teixobactin: A Molecular Dynamics Study.

Yang Liu, Weifeng Li, Mary B. Chan-Park, Yuguang Mu

J. Chem. Inf. Model., 2019

2018

Proposing drug fragments for dengue virus NS5 protein.

Amr Alhossary, Yaw Awuni, Chee Keong Kwoh, Yuguang Mu

J. Bioinform. Comput. Biol., 2018

2015

Fast, accurate, and reliable molecular docking with QuickVina 2.

Amr Alhossary, Stephanus Daniel Handoko, Yuguang Mu, Chee Keong Kwoh

Bioinform., 2015

2012

Accurate detection of SNPs using base-specific cleavage and mass spectrometry.

Ruimin Sun, Xiang Gao, Nanyu Han, Qiong Wu, Yuguang Mu, Kai Tang, Xin Chen

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011

Dynamically-Driven Inactivation of the Catalytic Machinery of the SARS 3C-Like Protease by the N214A Mutation on the Extra Domain.

Jiahai Shi, Nanyu Han, Liangzhong Lim, Shixiong Lua, J. Sivaraman, Lushan Wang, Yuguang Mu, Jianxing Song

PLoS Comput. Biol., 2011

2009

Amyloidogenesis Abolished by Proline Substitutions but Enhanced by Lipid Binding.

Ping Jiang, Weixin Xu, Yuguang Mu

PLoS Comput. Biol., 2009