Zachary A. King

According to our database, Zachary A. King authored at least 10 papers between 2015 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree.

Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King

Nucleic Acids Res., 2020

Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data.

Avi Kumar, Jack Mitchener, Zachary A. King, Christian M. Metallo

BMC Bioinform., 2020

Visualizing metabolic network dynamics through time-series metabolomic data.

Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger

BMC Bioinform., 2020

2019

The genetic basis for adaptation of model-designed syntrophic co-cultures.

Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O'Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M. Feist

PLoS Comput. Biol., 2019

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data.

Jean-Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand Sastry, Yara Seif, Bernhard O. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre-Étienne Jacques

PLoS Comput. Biol., 2019

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism.

Chuankai Cheng, Edward J. O'Brien, Douglas McCloskey, Jose Utrilla, Connor A. Olson, Ryan A. LaCroix, Troy E. Sandberg, Adam M. Feist, Bernhard O. Palsson, Zachary A. King

PLoS Comput. Biol., 2019

2018

COBRAme: A computational framework for genome-scale models of metabolism and gene expression.

Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson

PLoS Comput. Biol., 2018

Escher-FBA: a web application for interactive flux balance analysis.

Elliot Rowe, Bernhard O. Palsson, Zachary A. King

BMC Syst. Biol., 2018

2016

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.

Zachary A. King, Justin Lu, Andreas Dräger, Philip Miller, Stephen Federowicz, Joshua A. Lerman, Ali Ebrahim, Bernhard O. Palsson, Nathan E. Lewis

Nucleic Acids Res., 2016

2015

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.

Zachary A. King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis, Bernhard O. Palsson

PLoS Comput. Biol., 2015