Andreas Dräger

Orcid: 0000-0002-1240-5553

  • University of Tübingen, Center for Bioinformatics (ZBIT), Germany
  • University of California, San Diego, Department of Bioengineering, CA, USA

According to our database1, Andreas Dräger authored at least 50 papers between 2007 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:



Advancements in computational modelling of biological systems: seventh annual SysMod meeting.
Bioinform., September, 2023

New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells.
PLoS Comput. Biol., March, 2023

Hierarchical modelling of microbial communities.
Bioinform., January, 2023

Computational modelling in health and disease: highlights of the 6th annual SysMod meeting.
Bioinform., October, 2022

NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome.
Frontiers Bioinform., 2022

FluxomicsExplorer: Differential visual analysis of Flux Sampling based on Metabolomics.
Comput. Graph., 2022

The systems biology simulation core library.
Bioinform., 2022

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
Bioinform., 2021

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree.
Nucleic Acids Res., 2020

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
J. Integr. Bioinform., 2020

Systems biology graphical notation markup language (SBGNML) version 0.3.
J. Integr. Bioinform., 2020

Visualizing metabolic network dynamics through time-series metabolomic data.
BMC Bioinform., 2020

A Web-based Visual Analytics Application for Biological Networks.
Proceedings of the 22nd Eurographics Conference on Visualization, 2020

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes.
BMC Bioinform., 2019

Harmonizing semantic annotations for computational models in biology.
Briefings Bioinform., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform., 2018

Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling.
PLoS Comput. Biol., 2016

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.
Nucleic Acids Res., 2016

Evaluation of rate law approximations in bottom-up kinetic models of metabolism.
BMC Syst. Biol., 2016

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.
PLoS Comput. Biol., 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integr. Bioinform., 2015

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.
BMC Syst. Biol., 2015

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Bioinform., 2015

SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology.
Comput., 2014

Precise generation of systems biology models from KEGG pathways.
BMC Syst. Biol., 2013

The systems biology simulation core algorithm.
BMC Syst. Biol., 2013

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Syst. Biol., 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Syst. Biol., 2013

GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML.
Bioinform., 2013

CySBML: a Cytoscape plugin for SBML.
Bioinform., 2012

Qualitative translation of relations from BioPAX to SBML qual.
Bioinform., 2012

Computational Modeling of Biochemical Networks.
PhD thesis, 2011

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats.
Bioinform., 2011

Inferring statin-induced gene regulatory relationships in primary human hepatocytes.
Bioinform., 2011

JSBML: a flexible Java library for working with SBML.
Bioinform., 2011

Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization.
Proceedings of the IEEE Congress on Evolutionary Computation, 2011

ModuleMaster: A new tool to decipher transcriptional regulatory networks.
Biosyst., 2010

Network Inference by Considering Multiple Objectives: Insights from In Vivo Transcriptomic Data Generated by a Synthetic Network.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

BowTieBuilder: modeling signal transduction pathways.
BMC Syst. Biol., 2009

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies.
BMC Syst. Biol., 2009

SBML2L<sup>A</sup>T<sub>E</sub>X: Conversion of SBML files into human-readable reports.
Bioinform., 2009

On the Benefits of Multimodal Optimization for Metablic Network Modeling.
Proceedings of the German Conference on Bioinformatics 2009, 2009

SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks.
BMC Syst. Biol., 2008

BioJava: an open-source framework for bioinformatics.
Bioinform., 2008

Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007

Benchmarking evolutionary algorithms on convenience kinetics modelsof the valine and leucine biosynthesis in C. glutamicum.
Proceedings of the IEEE Congress on Evolutionary Computation, 2007

Inferring Gene Regulatory Networks by Machine Learning Methods.
Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007