Nathan E. Lewis

Orcid: 0000-0001-7700-3654

According to our database1, Nathan E. Lewis authored at least 15 papers between 2009 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

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Bibliography

2022
An improved algorithm for flux variability analysis.
BMC Bioinform., December, 2022

Inferring a spatial code of cell-cell interactions across a whole animal body.
PLoS Comput. Biol., November, 2022

Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models.
PLoS Comput. Biol., 2022

What are housekeeping genes?
PLoS Comput. Biol., 2022

2020
CHOmics: A web-based tool for multi-omics data analysis and interactive visualization in CHO cell lines.
PLoS Comput. Biol., 2020

StanDep: Capturing transcriptomic variability improves context-specific metabolic models.
PLoS Comput. Biol., 2020

2019
Assessing key decisions for transcriptomic data integration in biochemical networks.
PLoS Comput. Biol., 2019

Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions.
PLoS Comput. Biol., 2019

2018
Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting.
PLoS Comput. Biol., 2018

2016
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.
Nucleic Acids Res., 2016

2015
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.
PLoS Comput. Biol., 2015

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Bioinform., 2015

2012
Causation in biology : a biomolecular systems view.
PhD thesis, 2012

A proof for loop-law constraints in stoichiometric metabolic networks.
BMC Syst. Biol., 2012

2009
Metabolic Systems Biology.
Proceedings of the Encyclopedia of Complexity and Systems Science, 2009


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