Zixin Deng

According to our database, Zixin Deng authored at least 17 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Sufficient conditions for judging quasi-strictly diagonally dominant tensors.

Zixin Deng, Zheng-Hai Huang, Xinhe Miao

Comput. Appl. Math., February, 2023

Mslar: Microbial synthetic lethal and rescue database.

Senbin Zhu, Qian-Hu Jiang, Zhi-Guo Chen, Xiang Zhou, Yan-Ting Jin, Zixin Deng, Feng-Biao Guo

PLoS Comput. Biol., 2023

2022

VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens.

Meng Wang, Ying-Xian Goh, Cui Tai, Hui Wang, Zixin Deng, Hong-Yu Ou

Nucleic Acids Res., 2022

Anti-CRISPRdb v2.2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins.

Chuan Dong, Xin Wang, Cong Ma, Zhi Zeng, Dong-Kai Pu, Shuo Liu, Candy-S. Wu, Shixin Chen, Zixin Deng, Feng-Biao Guo

Database J. Biol. Databases Curation, 2022

T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model.

Yumeng Zhang, Yangming Zhang, Yi Xiong, Hui Wang, Zixin Deng, Jiangning Song, Hong-Yu Ou

Briefings Bioinform., 2022

2019

ICEberg 2.0: an updated database of bacterial integrative and conjugative elements.

Meng Liu, Xiaobin Li, Yingzhou Xie, Dexi Bi, Jingyong Sun, Jun Li, Cui Tai, Zixin Deng, Hong-Yu Ou

Nucleic Acids Res., 2019

2018

TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci.

Yingzhou Xie, Yiqing Wei, Yue Shen, Xiaobin Li, Hao Zhou, Cui Tai, Zixin Deng, Hong-Yu Ou

Nucleic Acids Res., 2018

oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements.

Xiaobin Li, Yingzhou Xie, Meng Liu, Cui Tai, Jingyong Sun, Zixin Deng, Hong-Yu Ou

Nucleic Acids Res., 2018

VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria.

Jun Li, Cui Tai, Zixin Deng, Weihong Zhong, Yongqun He, Hong-Yu Ou

Briefings Bioinform., 2018

2017

PhID: An Open-Access Integrated Pharmacology Interactions Database for Drugs, Targets, Diseases, Genes, Side-Effects, and Pathways.

Zhe Deng, Weizhong Tu, Zixin Deng, Qian-Nan Hu

J. Chem. Inf. Model., October, 2017

SynBioEcoli: a comprehensive metabolism network of engineered E. coli in three dimensional visualization.

Weizhong Tu, Shaozhen Ding, Ling Wu, Zhe Deng, Hui Zhu, Xiaotong Xu, Chen Lin, Chaonan Ye, Minlu Han, Mengna Zhao, Juan Liu, Zixin Deng, Junni Chen, Dong-Qing Wei, Qian-Nan Hu

Quant. Biol., 2017

2014

Pairwise input neural network for target-ligand interaction prediction.

Caihua Wang, Juan Liu, Fei Luo, Yafang Tan, Zixin Deng, Qian-Nan Hu

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

SecReT4: a web-based bacterial type IV secretion system resource.

Dexi Bi, Linmeng Liu, Cui Tai, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou

Nucleic Acids Res., 2013

2012

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria.

Dexi Bi, Zhen Xu, Ewan M. Harrison, Cui Tai, Yiqing Wei, Xinyi He, Shiru Jia, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou

Nucleic Acids Res., 2012

2011

TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea.

Yucheng Shao, Ewan M. Harrison, Dexi Bi, Cui Tai, Xinyi He, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng

Nucleic Acids Res., 2011

2010

mGenomeSubtractor: a web-based tool for parallel <i>in silico</i> subtractive hybridization analysis of multiple bacterial genomes.

Yucheng Shao, Xinyi He, Ewan M. Harrison, Cui Tai, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng

Nucleic Acids Res., 2010

2007

MobilomeFINDER: web-based tools for <i>in silico</i> and experimental discovery of bacterial genomic islands.

Hong-Yu Ou, Xinyi He, Ewan M. Harrison, Bridget R. Kulasekara, Ali Bin Thani, Aras Kadioglu, Stephen Lory, Jay C. D. Hinton, Michael R. Barer, Zixin Deng, Kumar Rajakumar

Nucleic Acids Res., 2007