Ziyi Li

Orcid: 0000-0001-8359-0533

Affiliations:
  • University of Texas, MD Anderson Cancer Center, Houston, TX, USA
  • Emory University, Atlanta, GA, USA (PhD 2018)


According to our database1, Ziyi Li authored at least 15 papers between 2017 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

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Bibliography

2024
SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric.
Bioinform., 2024

2023
A novel statistical method for decontaminating T-cell receptor sequencing data.
Briefings Bioinform., July, 2023

A comprehensive assessment of cell type-specific differential expression methods in bulk data.
Briefings Bioinform., January, 2023

2022
A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data.
Bioinform., October, 2022

CondiS: A conditional survival distribution-based method for censored data imputation overcoming the hurdle in machine learning-based survival analysis.
J. Biomed. Informatics, 2022

EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.
Bioinform., 2022

CondiS web app: imputation of censored lifetimes for machine learning-based survival analysis.
Bioinform., 2022

NeuCA web server: a neural network-based cell annotation tool with web-app and GUI.
Bioinform., 2022

A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq.
Briefings Bioinform., 2022

2021
Complete deconvolution of DNA methylation signals from complex tissues: a geometric approach.
Bioinform., 2021

2020
Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities.
Bioinform., 2020

Robust partial reference-free cell composition estimation from tissue expression.
Bioinform., 2020

2019
Distributed learning from multiple EHR databases: Contextual embedding models for medical events.
J. Biomed. Informatics, 2019

Dissecting differential signals in high-throughput data from complex tissues.
Bioinform., 2019

2017
Incorporating biological information in sparse principal component analysis with application to genomic data.
BMC Bioinform., 2017


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