Kirk Roberts

According to our database1, Kirk Roberts authored at least 98 papers between 2006 and 2021.

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Bibliography

2021
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review.
J. Biomed. Informatics, 2021

An evaluation of two commercial deep learning-based information retrieval systems for COVID-19 literature.
J. Am. Medical Informatics Assoc., 2021

Generalized and Transferable Patient Language Representation for Phenotyping with Limited Data.
CoRR, 2021

2020
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents.
BMC Medical Informatics Decis. Mak., 2020

A content-based literature recommendation system for datasets to improve data reusability - A case study on Gene Expression Omnibus (GEO) datasets.
J. Biomed. Informatics, 2020

Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning.
J. Biomed. Informatics, 2020

Deep learning in clinical natural language processing: a methodical review.
J. Am. Medical Informatics Assoc., 2020

TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19.
J. Am. Medical Informatics Assoc., 2020

Automatic classification of scanned electronic health record documents.
Int. J. Medical Informatics, 2020

Leveraging Spatial Information in Radiology Reports for Ischemic Stroke Phenotyping.
CoRR, 2020

Extracting Concepts for Precision Oncology from the Biomedical Literature.
CoRR, 2020

TREC-COVID: Constructing a Pandemic Information Retrieval Test Collection.
CoRR, 2020

An informatics research platform to make public gene expression time-course datasets reusable for more scientific discoveries.
Database J. Biol. Databases Curation, 2020

A content-based dataset recommendation system for researchers - a case study on Gene Expression Omnibus (GEO) repository.
Database J. Biol. Databases Curation, 2020

Addressing the Search Challenges of Precision Medicine with Information Retrieval Systems and Physician Readers.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

Evaluation of Dataset Selection for Pre-Training and Fine-Tuning Transformer Language Models for Clinical Question Answering.
Proceedings of The 12th Language Resources and Evaluation Conference, 2020

Rad-SpatialNet: A Frame-based Resource for Fine-Grained Spatial Relations in Radiology Reports.
Proceedings of The 12th Language Resources and Evaluation Conference, 2020

Extracting Adherence Information from Electronic Health Records.
Proceedings of the 28th International Conference on Computational Linguistics, 2020

A health consumer ontology of fast food information.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Patient Cohort Retrieval using Transformer Language Models.
Proceedings of the AMIA 2020, 2020

Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review.
Proceedings of the AMIA 2020, 2020

RadLex Normalization in Radiology Reports.
Proceedings of the AMIA 2020, 2020

2019
Distributed learning from multiple EHR databases: Contextual embedding models for medical events.
J. Biomed. Informatics, 2019

A frame semantic overview of NLP-based information extraction for cancer-related EHR notes.
J. Biomed. Informatics, 2019

Enhancing clinical concept extraction with contextual embeddings.
J. Am. Medical Informatics Assoc., 2019

Enhancing Clinical Concept Extraction with Contextual Embedding.
CoRR, 2019

Conceiving an application ontology to model patient human papillomavirus vaccine counseling for dialogue management.
BMC Bioinform., 2019

Overview of the TREC 2019 Precision Medicine Track.
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines.
Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Characterization of Behavioral Transitions Through Social Media Analysis: A Mixed-Methods Approach.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Early Usability Assessment of a Conversational Agent for HPV Vaccination.
Proceedings of the Improving Usability, Safety and Patient Outcomes with Health Information Technology, 2019

A Paraphrase Generation System for EHR Question Answering.
Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

Extraction of Lactation Frames from Drug Labels and LactMed.
Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Relation Extraction from Clinical Narratives Using Pre-trained Language Models.
Proceedings of the AMIA 2019, 2019

Using FHIR to Construct a Corpus of Clinical Questions Annotated with Logical Forms and Answers.
Proceedings of the AMIA 2019, 2019

A Dataset Recommendation System for Researchers based on Publications.
Proceedings of the AMIA 2019, 2019

A frame semantic overview of NLP-based information extraction for cancer-related EHR notes: a scoping review.
Proceedings of the AMIA 2019, 2019

2018
Overview of the TREC 2018 Precision Medicine Track.
Proceedings of the Twenty-Seventh Text REtrieval Conference, 2018

A FrameNet for Cancer Information in Clinical Narratives: Schema and Annotation.
Proceedings of the Eleventh International Conference on Language Resources and Evaluation, 2018

A Frame-Based NLP System for Cancer-Related Information Extraction.
Proceedings of the AMIA 2018, 2018

Benchmarking Information Retrieval for Precision Oncology: the TREC Precision Medicine Track.
Proceedings of the AMIA 2018, 2018

Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC).
Proceedings of the AMIA 2018, 2018

2017
A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources.
J. Assoc. Inf. Sci. Technol., 2017

Biomedical informatics advancing the national health agenda: the AMIA 2015 year-in-review in clinical and consumer informatics.
J. Am. Medical Informatics Assoc., 2017

Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge.
Database J. Biol. Databases Curation, 2017

A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.
Database J. Biol. Databases Curation, 2017

Overview of the TREC 2017 Precision Medicine Track.
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017

Overview of the TAC 2017 Adverse Reaction Extraction from Drug Labels Track.
Proceedings of the 2017 Text Analysis Conference, 2017

Representation Learning for Retinal Vasculature Embeddings.
Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017

Interweaving Domain Knowledge and Unsupervised Learning for Psychiatric Stressor Extraction from Clinical Notes.
Proceedings of the Advances in Artificial Intelligence: From Theory to Practice, 2017

CLEF 2017: Multimodal Spatial Role Labeling (mSpRL) Task Overview.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2017

CLEF 2017: Multimodal Spatial Role Labeling Task Working Notes.
Proceedings of the Working Notes of CLEF 2017, 2017

A Semantic Parsing Method for Mapping Clinical Questions to Logical Forms.
Proceedings of the AMIA 2017, 2017

Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge.
Proceedings of the AMIA 2017, 2017

Leveraging existing corpora for de-identification of psychiatric notes using domain adaptation.
Proceedings of the AMIA 2017, 2017

2016
Interactive use of online health resources: a comparison of consumer and professional questions.
J. Am. Medical Informatics Assoc., 2016

State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track.
Inf. Retr. J., 2016

Overview of the TREC 2016 Clinical Decision Support Track.
Proceedings of The Twenty-Fifth Text REtrieval Conference, 2016

Annotating Logical Forms for EHR Questions.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Annotating Named Entities in Consumer Health Questions.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation.
Proceedings of the 2016 IEEE Conference on Computer Vision and Pattern Recognition, 2016

Resource Classification for Medical Questions.
Proceedings of the AMIA 2016, 2016

Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions.
Proceedings of the AMIA 2016, 2016

Assessing the Corpus Size vs. Similarity Trade-off for Word Embeddings in Clinical NLP.
Proceedings of the Clinical Natural Language Processing Workshop, 2016

2015
The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.
J. Biomed. Informatics, 2015

Overview of the TREC 2015 Clinical Decision Support Track.
Proceedings of The Twenty-Fourth Text REtrieval Conference, 2015

Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language.
Proceedings of the AMIA 2015, 2015

An Ensemble Method for Spelling Correction in Consumer Health Questions.
Proceedings of the AMIA 2015, 2015

2014
Annotating Question Decomposition on Complex Medical Questions.
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

Decomposing Consumer Health Questions.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Structuring Operative Notes using Active Learning.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Automatically Classifying Question Types for Consumer Health Questions.
Proceedings of the AMIA 2014, 2014

Error Propagation in EHRs via Copy/Paste: An Analysis of Relative Dates.
Proceedings of the AMIA 2014, 2014

2013
A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text.
J. Am. Medical Informatics Assoc., 2013

Recognizing Spatial Containment Relations between Event Mentions.
Proceedings of the 10th International Conference on Computational Semantics, 2013

2012
A supervised framework for resolving coreference in clinical records.
J. Am. Medical Informatics Assoc., 2012

Cohort Sherpherd II: Verifying Cohort Constraints from Hospital Visits.
Proceedings of The Twenty-First Text REtrieval Conference, 2012

UTD-SpRL: A Joint Approach to Spatial Role Labeling.
Proceedings of the 6th International Workshop on Semantic Evaluation, 2012

UTDHLT: COPACETIC System for Choosing Plausible Alternatives.
Proceedings of the 6th International Workshop on Semantic Evaluation, 2012

EmpaTweet: Annotating and Detecting Emotions on Twitter.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Annotating Spatial Containment Relations Between Events.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Locational relativity and domain constraints in spatial questions.
Proceedings of the SIGSPATIAL 2012 International Conference on Advances in Geographic Information Systems (formerly known as GIS), 2012

A Machine Learning Approach for Identifying Anatomical Locations of Actionable Findings in Radiology Reports.
Proceedings of the AMIA 2012, 2012

2011
A flexible framework for deriving assertions from electronic medical records.
J. Am. Medical Informatics Assoc., 2011

Automatic extraction of relations between medical concepts in clinical texts.
J. Am. Medical Informatics Assoc., 2011

Detecting New and Emerging Events in Streaming News Documents.
Int. J. Semantic Comput., 2011

Cohort Shepherd: Discoving Cohort Traits from Hospital Visits.
Proceedings of The Twentieth Text REtrieval Conference, 2011

Detecting New and Emerging Events from Textual Sources.
Proceedings of the 5th IEEE International Conference on Semantic Computing (ICSC 2011), 2011

Unsupervised Learning of Selectional Restrictions and Detection of Argument Coercions.
Proceedings of the 2011 Conference on Empirical Methods in Natural Language Processing, 2011

2010
UTDMet: Combining WordNet and Corpus Data for Argument Coercion Detection.
Proceedings of the 5th International Workshop on Semantic Evaluation, 2010

A Linguistic Resource for Semantic Parsing of Motion Events.
Proceedings of the International Conference on Language Resources and Evaluation, 2010

C-3: Coherence and Coreference Corpus.
Proceedings of the International Conference on Language Resources and Evaluation, 2010

Toponym Disambiguation Using Events.
Proceedings of the Twenty-Third International Florida Artificial Intelligence Research Society Conference, 2010

2009
Building an Annotated Textual Inference Corpus for Motion and Space.
Proceedings of the 2009 Workshop on Applied Textual Inference, 2009

2008
Scaling Answer Type Detection to Large Hierarchies.
Proceedings of the International Conference on Language Resources and Evaluation, 2008

2007
Question Answering with LCC's CHAUCER-2 at TREC 2007.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

2006
Question Answering with LCC's CHAUCER at TREC 2006.
Proceedings of the Fifteenth Text REtrieval Conference, 2006


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