Agnieszka Rybarczyk

According to our database, Agnieszka Rybarczyk authored at least 13 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Algorithms for evaluation of minimal cut sets.

Marcin Radom, Agnieszka Rybarczyk, Igor Piekarz, Piotr Formanowicz

J. Biomed. Informatics, 2024

RNA World with Inhibitors.

Jaroslaw Synak, Agnieszka Rybarczyk, Marta Kasprzak, Jacek Blazewicz

Entropy, 2024

2022

RNA World Modeling: A Comparison of Two Complementary Approaches.

Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz

Entropy, 2022

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia.

Alastair M. Kilpatrick, Farzana Rahman, Audra Anjum, Sayane Shome, K. M. Salim Andalib, Shrabonti Banik, Sanjana F. Chowdhury, Peter Coombe, Yesid Cuesta Astroz, J. Maxwell Douglas, Pradeep Eranti, Aleyna D. Kiran, Sachendra Kumar, Hyeri Lim, Valentina Lorenzi, Tiago Lubiana, Sakib Mahmud, Rafael Puche, Agnieszka Rybarczyk, Syed Muktadir Al Sium, David Twesigomwe, Tomasz Zok, Christine A. Orengo, Iddo Friedberg, Janet Kelso, Lonnie R. Welch

Bioinform., 2022

2019

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs.

Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk

Bioinform., 2019

2018

Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets.

Dorota Formanowicz, Agnieszka Rybarczyk, Piotr Formanowicz

Fundam. Informaticae, 2018

The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach.

Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk, Piotr Formanowicz

Biosyst., 2018

2017

Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA.

Agnieszka Mickiewicz, Joanna Sarzynska, Maciej Milostan, Anna Kurzynska-Kokorniak, Agnieszka Rybarczyk, Piotr Lukasiak, Tadeusz Kulinski, Marek Figlerowicz, Jacek Blazewicz

Comput. Biol. Chem., 2017

Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems.

Marcin Radom, Agnieszka Rybarczyk, Bartlomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz

Bioinform., 2017

Tabu Search for the RNA Partial Degradation Problem.

Agnieszka Rybarczyk, Alain Hertz, Marta Kasprzak, Jacek Blazewicz

Int. J. Appl. Math. Comput. Sci., 2017

2015

New in silico approach to assessing RNA secondary structures with non-canonical base pairs.

Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

BMC Bioinform., 2015

2012

Poseidon: An information retrieval and extraction system for metagenomic marine science.

Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz

Ecol. Informatics, 2012

2011

RNA Partial Degradation Problem: Motivation, Complexity, Algorithm.

Jacek Blazewicz, Marek Figlerowicz, Marta Kasprzak, Martyna Nowacka, Agnieszka Rybarczyk

J. Comput. Biol., 2011