Christine A. Orengo
Orcid: 0000-0002-7141-8936Affiliations:
- University College London, Institute of Structural and Molecular Biology, UK
According to our database1,
Christine A. Orengo
authored at least 89 papers
between 1996 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
On csauthors.net:
Bibliography
2023
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.
Bioinform., January, 2023
2022
PLoS Comput. Biol., December, 2022
Nucleic Acids Res., 2022
BMC Bioinform., 2022
A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation, 2022
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.
Briefings Bioinform., 2022
2021
Nucleic Acids Res., 2021
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.
Briefings Bioinform., 2021
2020
Nucleic Acids Res., 2020
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res., 2020
Bioinform., 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
CATH: expanding the horizons of structure-based functional annotations for genome sequences.
Nucleic Acids Res., 2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019
BMC Bioinform., 2019
Associating Protein Domains with Biological Functions: A Tripartite Network Approach.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019
2018
Nucleic Acids Res., 2018
2017
Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.
PLoS Comput. Biol., 2017
Nucleic Acids Res., 2017
CATH: an expanded resource to predict protein function through structure and sequence.
Nucleic Acids Res., 2017
ISCB's initial reaction to New England Journal of Medicine editorial on data sharing.
Bioinform., 2017
2016
Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases.
PLoS Comput. Biol., 2016
ISCB's Initial Reaction to <i>The New England Journal of Medicine</i> Editorial on Data Sharing.
PLoS Comput. Biol., 2016
2015
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
Nucleic Acids Res., 2015
CATH FunFHMMer web server: protein functional annotations using functional family assignments.
Nucleic Acids Res., 2015
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
Bioinform., 2015
2014
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.
Nucleic Acids Res., 2014
2013
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
Nucleic Acids Res., 2013
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res., 2013
2012
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
PLoS Comput. Biol., 2012
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.
Nucleic Acids Res., 2012
2011
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.
Nucleic Acids Res., 2011
Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
Nucleic Acids Res., 2011
BMC Bioinform., 2011
2010
Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling.
PLoS Comput. Biol., 2010
Nucleic Acids Res., 2010
Bioinform., 2010
2009
FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies.
PLoS Comput. Biol., 2009
The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies.
Nucleic Acids Res., 2009
An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D.
BMC Bioinform., 2009
2008
Nucleic Acids Res., 2008
Nucleic Acids Res., 2008
FFPred: an integrated feature-based function prediction server for vertebrate proteomes.
Nucleic Acids Res., 2008
LigASite - a database of biologically relevant binding sites in proteins with known <i>apo</i>-structures.
Nucleic Acids Res., 2008
2007
CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures.
PLoS Comput. Biol., 2007
Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes.
PLoS Comput. Biol., 2007
PLoS Comput. Biol., 2007
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
Nucleic Acids Res., 2007
Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint.
BMC Bioinform., 2007
Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips.
BMC Bioinform., 2007
Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.
Bioinform., 2007
2006
Nucleic Acids Res., 2006
Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering.
Proceedings of the Computational Life Sciences II, 2006
2005
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Nucleic Acids Res., 2005
Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit.
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005
2004
Nucleic Acids Res., 2004
A practical and robust sequence search strategy for structural genomics target selection.
Bioinform., 2004
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004
Microeconomic Principles Explain an Optimal Genome Size in Bacteria.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004
Consensus Clustering and Functional Interpretation of Gene Expression Data.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004
BioMap: Gene Family based Integration of Heterogeneous Biological Databases Using AutoMed Metadata.
Proceedings of the 15th International Workshop on Database and Expert Systems Applications (DEXA 2004), with CD-ROM, 30 August, 2004
2003
The CATH database: an extended protein family resource for structural and functional genomics.
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
A Structural Perspective on Genome Evolution(Invited Talk).
Proceedings of the German Conference on Bioinformatics, 2003
2002
PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.
Bioinform., 2002
2001
A rapid classification protocol for the CATH Domain Database to support structural genomics.
Nucleic Acids Res., 2001
VIDA: a virus database system for the organization of animal virus genome open reading frames.
Nucleic Acids Res., 2001
A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis.
Proceedings of the Advances in Intelligent Data Analysis, 4th International Conference, 2001
2000
1999
Nucleic Acids Res., 1999
1998
[Invited Lecture] Protein Folds and Functions.
Proceedings of the German Conference on Bioinformatics, 1998
1996