Christine A. Orengo

According to our database1, Christine A. Orengo authored at least 71 papers between 1996 and 2019.

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Bibliography

2019
CATH: expanding the horizons of structure-based functional annotations for genome sequences.
Nucleic Acids Research, 2019

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Research, 2019

FunFam protein families improve residue level molecular function prediction.
BMC Bioinformatics, 2019

Associating Protein Domains with Biological Functions: A Tripartite Network Approach.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

2018
Gene3D: Extensive prediction of globular domains in proteins.
Nucleic Acids Research, 2018

2017
Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.
PLoS Computational Biology, 2017

InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Research, 2017

CATH: an expanded resource to predict protein function through structure and sequence.
Nucleic Acids Research, 2017

ISCB's initial reaction to New England Journal of Medicine editorial on data sharing.
Bioinformatics, 2017

2016
Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases.
PLoS Computational Biology, 2016

ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing.
PLoS Computational Biology, 2016

Gene3D: expanding the utility of domain assignments.
Nucleic Acids Research, 2016

2015
CATH: comprehensive structural and functional annotations for genome sequences.
Nucleic Acids Research, 2015

The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Research, 2015

Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Research, 2015

CATH FunFHMMer web server: protein functional annotations using functional family assignments.
Nucleic Acids Research, 2015

FUN-L: gene prioritization for RNAi screens.
Bioinformatics, 2015

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
Bioinformatics, 2015

2014
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.
Nucleic Acids Research, 2014

2013
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
Nucleic Acids Research, 2013

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Research, 2013

Protein function prediction using domain families.
BMC Bioinformatics, 2013

2012
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
PLoS Computational Biology, 2012

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.
Nucleic Acids Research, 2012

InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Research, 2012

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.
Nucleic Acids Research, 2012

2011
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.
Nucleic Acids Research, 2011

Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
Nucleic Acids Research, 2011

Characterization of pathogenic germline mutations in human Protein Kinases.
BMC Bioinformatics, 2011

2010
Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling.
PLoS Computational Biology, 2010

Gene3D: merging structure and function for a Thousand genomes.
Nucleic Acids Research, 2010

A fast and automated solution for accurately resolving protein domain architectures.
Bioinformatics, 2010

2009
FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies.
PLoS Computational Biology, 2009

InterPro: the integrative protein signature database.
Nucleic Acids Research, 2009

The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies.
Nucleic Acids Research, 2009

An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D.
BMC Bioinformatics, 2009

2008
Gene3D: comprehensive structural and functional annotation of genomes.
Nucleic Acids Research, 2008

ISPIDER Central: an integrated database web-server for proteomics.
Nucleic Acids Research, 2008

FFPred: an integrated feature-based function prediction server for vertebrate proteomes.
Nucleic Acids Research, 2008

LigASite - a database of biologically relevant binding sites in proteins with known apo-structures.
Nucleic Acids Research, 2008

2007
CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures.
PLoS Computational Biology, 2007

Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes.
PLoS Computational Biology, 2007

Inferring Function Using Patterns of Native Disorder in Proteins.
PLoS Computational Biology, 2007

New developments in the InterPro database.
Nucleic Acids Research, 2007

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
Nucleic Acids Research, 2007

Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint.
BMC Bioinformatics, 2007

Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips.
BMC Bioinformatics, 2007

Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.
Bioinformatics, 2007

2006
Gene3D: modelling protein structure, function and evolution.
Nucleic Acids Research, 2006

Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering.
Proceedings of the Computational Life Sciences II, 2006

2005
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Nucleic Acids Research, 2005

Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit.
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005

2004
EyeSite: a semi-automated database of protein families in the eye.
Nucleic Acids Research, 2004

A practical and robust sequence search strategy for structural genomics target selection.
Bioinformatics, 2004

A structural perspective on genome evolution.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Microeconomic Principles Explain an Optimal Genome Size in Bacteria.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004

Consensus Clustering and Functional Interpretation of Gene Expression Data.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004

BioMap: Gene Family based Integration of Heterogeneous Biological Databases Using AutoMed Metadata.
Proceedings of the 15th International Workshop on Database and Expert Systems Applications (DEXA 2004), with CD-ROM, 30 August, 2004

2003
The CATH database: an extended protein family resource for structural and functional genomics.
Nucleic Acids Research, 2003

Gene3D: structural assignments for the biologist and bioinformaticist alike.
Nucleic Acids Research, 2003

Recognizing the fold of a protein structure.
Bioinformatics, 2003

A Structural Perspective on Genome Evolution(Invited Talk).
Proceedings of the German Conference on Bioinformatics, 2003

2002
A framework for modelling virus gene expression data.
Intell. Data Anal., 2002

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.
Bioinformatics, 2002

2001
A rapid classification protocol for the CATH Domain Database to support structural genomics.
Nucleic Acids Research, 2001

VIDA: a virus database system for the organization of animal virus genome open reading frames.
Nucleic Acids Research, 2001

A Framework for Modelling Short, High-Dimensional Multivariate Time Series: Preliminary Results in Virus Gene Expression Data Analysis.
Proceedings of the Advances in Intelligent Data Analysis, 4th International Conference, 2001

2000
Assigning genomic sequences to CATH.
Nucleic Acids Research, 2000

1999
The CATH Database provides insights into protein structure/function relationships.
Nucleic Acids Research, 1999

1998
[Invited Lecture] Protein Folds and Functions.
Proceedings of the German Conference on Bioinformatics, 1998

1996
A Protein Structure Comparison Methodology.
Computers & Chemistry, 1996


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